CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY24170
CDY36943

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49030.1	CDY24170	AT3G47620.1	21798944
AT1G49030.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48592	Canola	plastid	91.72	82.29
CDY71552	Canola	plastid	81.53	63.37
CDY62854	Canola	cytosol	82.17	59.17
AT1G49030.1	Thale cress	cytosol	83.44	58.48
CDY24480	Canola	cytosol, extracellular, vacuole	48.41	57.14
CDX92238	Canola	plasma membrane	48.41	57.14
CDX92237	Canola	cytosol	61.15	55.49
CDY70500	Canola	cytosol	47.77	48.39
CDY51779	Canola	endoplasmic reticulum, extracellular	27.39	43.43
CDY71864	Canola	cytosol	40.76	42.38
CDX81680	Canola	cytosol	40.13	41.72
CDY33732	Canola	cytosol	40.13	41.72
CDY33731	Canola	cytosol	40.13	41.72
CDY45296	Canola	cytosol	39.49	41.06
CDX96001	Canola	cytosol	39.49	38.04
CDY29143	Canola	cytosol	33.76	35.33
CDX81681	Canola	cytosol, plasma membrane, plastid	36.31	35.19
CDX81682	Canola	cytosol, plastid, vacuole	32.48	34.69
CDY33730	Canola	cytosol	33.12	34.44
CDY07373	Canola	cytosol	31.21	30.43
CDY04241	Canola	cytosol	31.21	30.43
CDY39895	Canola	cytosol	30.57	29.45
CDY38607	Canola	plasma membrane	28.66	27.95
CDX96000	Canola	plasma membrane	28.66	27.95
VIT_14s0006g03190.t01	Wine grape	cytosol, nucleus, plastid	54.14	26.98
VIT_17s0000g03960.t01	Wine grape	cytosol, nucleus, plastid	52.23	26.2
CDY38687	Canola	cytosol	31.21	24.02
CDY57571	Canola	cytosol	27.39	22.4
CDY57415	Canola	cytosol	27.39	22.28
CDY53672	Canola	cytosol	26.11	21.93
CDY06953	Canola	cytosol	26.75	21.76
Solyc03g119660.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	56.69	21.5
PGSC0003DMT400014354	Potato	cytosol, endoplasmic reticulum, nucleus	54.78	20.09

Protein Annotations

EnsemblPlants:CDY62851	EnsemblPlantsGene:GSBRNA2T00037674001	GO:A0A078JD90	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF49	PFAM:PF04749	ProteinID:CDY62851	ProteinID:CDY62851.1
SEG:seg	TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI0004EEEEAF	UniProt:A0A078JD90	MapMan:35.1

Description

BnaA06g03340DBnaA06g03340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JD90]

Coordinates

chrLK034206:+:16568..17712

Molecular Weight (calculated)

17556.2 Da

IEP (calculated)

4.510

GRAVY (calculated)

-0.168

Length

157 amino acids

Sequence
(BLAST)

001: MGRPDQNPAV SCQQPTITKW TSELFDCMND GENALITCFF PFITFGQIAE VIDEEGASSC GTSGMLYGVI CCLLGIPCVY SCTFRTKLRS KYGLPDAPAP
101: DWITHCFCEY CAFYQEYLEL KNRGLDPAIG WSGNVQRQRM GQQQEMMAPP MGQRMMG

Best Arabidopsis Sequence Match ( AT1G49030.1 )
(BLAST)

001: MGRPDQTPSP RMNNNFNPVF HAQSEQPVDE KRVLQAEQIY PNNGGVVNQP NQVPMRPGPP TYINQSATFN QPYGVSMAGP VHTQPSNWTS GLFDCMNDGE
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG

Arabidopsis Description

PCR6Protein PLANT CADMIUM RESISTANCE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.