Factsheet for VIT_14s0006g03190.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49030.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62851	Canola	cytosol, extracellular, plasma membrane	26.98	54.14
CDY48592	Canola	plastid	29.21	52.57
VIT_01s0011g03250.t01	Wine grape	cytosol	10.48	52.38
CDX92237	Canola	cytosol	25.71	46.82
AT3G18460.1	Thale cress	cytosol, extracellular, nucleus, plastid	27.3	46.74
CDY70500	Canola	cytosol	22.86	46.45
Bra022322.1-P	Field mustard	cytosol	25.08	45.66
VIT_01s0011g03240.t01	Wine grape	extracellular, plastid	24.44	45.29
VIT_01s0011g05430.t01	Wine grape	plastid	25.4	44.44
VIT_01s0011g05440.t01	Wine grape	plastid	25.08	43.89
VIT_03s0063g00570.t01	Wine grape	cytosol	25.08	43.65
CDY71552	Canola	plastid	27.94	43.56
AT1G49030.1	Thale cress	cytosol	29.84	41.96
AT3G18450.1	Thale cress	plastid	24.44	41.85
VIT_01s0011g05470.t01	Wine grape	cytosol, plastid	26.35	41.29
CDY62854	Canola	cytosol	28.57	41.28
Bra018774.1-P	Field mustard	cytosol	29.52	41.15
VIT_01s0011g03260.t01	Wine grape	plastid	26.98	40.67
VIT_17s0000g03960.t01	Wine grape	cytosol, nucleus, plastid	36.51	36.74
VIT_03s0063g00560.t01	Wine grape	cytosol	24.76	35.94
VIT_09s0002g04180.t01	Wine grape	cytosol	21.9	35.75
VIT_03s0063g00550.t01	Wine grape	cytosol	24.13	35.19
VIT_01s0011g05450.t01	Wine grape	mitochondrion	23.17	32.74
Solyc03g119660.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	37.78	28.74
VIT_01s0011g05420.t01	Wine grape	cytosol	23.81	27.17
PGSC0003DMT400014354	Potato	cytosol, endoplasmic reticulum, nucleus	36.51	26.87
VIT_08s0040g00140.t01	Wine grape	extracellular, plasma membrane, plastid	10.79	24.11

Protein Annotations

EntrezGene:100246421	wikigene:100246421	MapMan:35.1	EMBL:AM482464	ProteinID:CAN75309	ProteinID:CAN75309.1
ProteinID:CBI33669	ProteinID:CBI33669.3	UniProt:D7TT47	EMBL:FN596245	EntrezGene:LOC100246421	wikigene:LOC100246421
PFAM:PF04749	InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF49	TIGRFAMs:TIGR01571	UniParc:UPI00015C84D0
ArrayExpress:VIT_14s0006g03190	EnsemblPlantsGene:VIT_14s0006g03190	EnsemblPlants:VIT_14s0006g03190.t01	RefSeq:XP_002279956	RefSeq:XP_002279956.1	SEG:seg

Description

No Description!

Coordinates

chr14:-:21747481..21749101

Molecular Weight (calculated)

34563.9 Da

IEP (calculated)

6.780

GRAVY (calculated)

-0.361

Length

315 amino acids

Sequence
(BLAST)

001: MGHPERDHRS PFSGSSHPHI QQDSTDPQLL HTPQTSYAHA MQPGPQVPSQ NPHAIPLDPV QPMQFPPQPG HGNLSHTTHS SGQHLQSNPV QYPAQQAQFI
101: PEHRQTNVAC HAHQPTYNPA QPVPASYHVQ STNFQPSPAA MQYVPVHQTH ATMVVPLQQT APVIMVQSQP RVTTVGTEAW TTGLFDCMDD PTNALVTCCV
201: PCLTFGQVAE IVDNGHTSCG TSALVYGAIA CLIGCPFLIS CTYRTKLRSR YGLVESPAPD WVVHCLCDFC ALCQEYRELQ NRGFDPSIGW HANVARHMQQ
301: QQVAMVVPPN QTMIG

Best Arabidopsis Sequence Match ( AT1G49030.1 )
(BLAST)

001: MGRPDQTPSP RMNNNFNPVF HAQSEQPVDE KRVLQAEQIY PNNGGVVNQP NQVPMRPGPP TYINQSATFN QPYGVSMAGP VHTQPSNWTS GLFDCMNDGE
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG

Arabidopsis Description

PCR6Protein PLANT CADMIUM RESISTANCE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.