Factsheet for VIT_09s0002g04180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006535	Potato	cytosol, extracellular, plastid	46.11	74.17
KRH09890	Soybean	cytosol	62.18	71.43
Solyc03g120600.2.1	Tomato	cytosol, peroxisome, plastid	56.99	63.95
Solyc06g066590.2.1	Tomato	cytosol, nucleus, peroxisome	54.92	57.92
PGSC0003DMT400042614	Potato	cytosol, mitochondrion, peroxisome	54.4	57.38
AT1G52200.1	Thale cress	plastid	54.92	55.79
Bra018953.1-P	Field mustard	plastid	52.85	54.26
VIT_01s0011g03250.t01	Wine grape	cytosol	12.44	38.1
VIT_01s0011g03240.t01	Wine grape	extracellular, plastid	30.05	34.12
GSMUA_Achr5P22960_001	Banana	plastid	47.15	33.83
VIT_01s0011g05430.t01	Wine grape	plastid	31.09	33.33
VIT_01s0011g05440.t01	Wine grape	plastid	31.09	33.33
VIT_03s0063g00570.t01	Wine grape	cytosol	31.09	33.15
VIT_01s0011g05470.t01	Wine grape	cytosol, plastid	31.61	30.35
VIT_01s0011g03260.t01	Wine grape	plastid	29.53	27.27
VIT_03s0063g00550.t01	Wine grape	cytosol	30.05	26.85
VIT_03s0063g00560.t01	Wine grape	cytosol	30.05	26.73
VIT_01s0011g05450.t01	Wine grape	mitochondrion	30.57	26.46
VIT_17s0000g03960.t01	Wine grape	cytosol, nucleus, plastid	37.31	23.0
VIT_14s0006g03190.t01	Wine grape	cytosol, nucleus, plastid	35.75	21.9
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	44.04	20.33
VIT_01s0011g05420.t01	Wine grape	cytosol	27.98	19.57
VIT_08s0040g00140.t01	Wine grape	extracellular, plasma membrane, plastid	11.92	16.31

Protein Annotations

EntrezGene:100253175	wikigene:100253175	MapMan:35.1	EMBL:AM485913	ProteinID:CAN75403	ProteinID:CAN75403.1
ProteinID:CBI36115	ProteinID:CBI36115.3	UniProt:D7U0G9	EMBL:FN596494	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100253175	wikigene:LOC100253175	PFAM:PF04749
InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF46	TIGRFAMs:TIGR01571	UniParc:UPI0001984012	ArrayExpress:VIT_09s0002g04180
EnsemblPlantsGene:VIT_09s0002g04180	EnsemblPlants:VIT_09s0002g04180.t01	unigene:Vvi.22368	RefSeq:XP_002279160	RefSeq:XP_002279160.2	RefSeq:XP_002279160.3
RefSeq:XP_010654652.1	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:3835133..3837244

Molecular Weight (calculated)

21650.3 Da

IEP (calculated)

7.060

GRAVY (calculated)

-0.223

Length

193 amino acids

Sequence
(BLAST)

001: MGRIEASELS GGQPMAQPVG MSPVIQQPQL PSIQGGFYQD HATSGMVENF VNGRPWTTGL FDCHEHKTNA VMTTFFPCVT FGQIAEVVDE GEMTCPLGSF
101: IYLLMMPALC SHWIMGSKYR AKLRRKYDLV EAPHQDIVSH IFCPCCSLCQ EFRELKIRGL DPALGWKGIL AQRQRGQNQD QELKVPPNQA MFK

Best Arabidopsis Sequence Match ( AT1G52200.1 )
(BLAST)

001: MGRVTTPSEE DSNNGLPVQQ PGTPNQRTRV PVSQFAPPNY QQANVNLSVG RPWSTGLFDC QADQANAVLT TIVPCVTFGQ IAEVMDEGEM TCPLGTFMYL
101: LMMPALCSHW VMGSKYREKM RRKFNLVEAP YSDCASHVLC PCCSLCQEYR ELKIRNLDPS LGWNGILAQG QGQYEREAPS FAPTNQYMSK

Arabidopsis Description

PCR8Protein PLANT CADMIUM RESISTANCE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M815]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.