Factsheet for VIT_03s0063g00570.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g00560.t01	Wine grape	cytosol	83.98	70.05
VIT_03s0063g00550.t01	Wine grape	cytosol	80.66	67.59
Os02t0763000-01	Rice	plasma membrane	54.14	54.14
GSMUA_Achr6P02280_001	Banana	cytosol	52.49	52.2
EES05849	Sorghum	plastid	54.14	52.13
TraesCS6A01G321000.1	Wheat	plastid	52.49	50.8
TraesCS6B01G351700.1	Wheat	plastid	52.49	50.8
TraesCS6D01G300700.1	Wheat	plastid	52.49	50.8
Zm00001d052171_P001	Maize	cytosol, mitochondrion, plastid	53.04	50.79
KRH50266	Soybean	cytosol, peroxisome, plastid	54.14	50.78
KRH71150	Soybean	cytosol	54.14	50.26
VIT_01s0011g05430.t01	Wine grape	plastid	49.17	49.44
VIT_01s0011g05440.t01	Wine grape	plastid	49.17	49.44
VIT_01s0011g03240.t01	Wine grape	extracellular, plastid	44.2	47.06
VIT_01s0011g05470.t01	Wine grape	cytosol, plastid	50.28	45.27
KRH71889	Soybean	cytosol	44.75	45.25
VIT_01s0011g03260.t01	Wine grape	plastid	50.83	44.02
VIT_01s0011g03250.t01	Wine grape	cytosol	14.36	41.27
VIT_01s0011g05450.t01	Wine grape	mitochondrion	44.75	36.32
VIT_09s0002g04180.t01	Wine grape	cytosol	33.15	31.09
VIT_01s0011g05420.t01	Wine grape	cytosol	43.09	28.26
VIT_14s0006g03190.t01	Wine grape	cytosol, nucleus, plastid	43.65	25.08
VIT_08s0040g00140.t01	Wine grape	extracellular, plasma membrane, plastid	17.68	22.7
VIT_17s0000g03960.t01	Wine grape	cytosol, nucleus, plastid	39.23	22.68

Protein Annotations

ArrayExpress:VIT_03s0063g00570	EMBL:FN596006	EnsemblPlants:VIT_03s0063g00570.t01	EnsemblPlantsGene:VIT_03s0063g00570	EntrezGene:100241734	EntrezGene:LOC100241734
InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF92	PFAM:PF04749	ProteinID:CCB56876	ProteinID:CCB56876.1
RefSeq:XP_002282112	RefSeq:XP_002282112.1	SEG:seg	TIGRFAMs:TIGR01571	UniParc:UPI00015C8CE8	UniProt:F6HQB9
wikigene:100241734	wikigene:LOC100241734	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3:-:4070767..4072020

Molecular Weight (calculated)

19630.4 Da

IEP (calculated)

5.970

GRAVY (calculated)

-0.071

Length

181 amino acids

Sequence
(BLAST)

001: MNLSHSGREI YGADGHVGHA TAPGFPNPSP APPYATPYVV QYPDGTIRWS TGLCHCTDDP ANCLITCCCP CITFGQIAEI VSKGSSNCAV SGTLYALLCF
101: TGLSCLYSCA YRSRLRAEYD LEESPCADCL VHFCCEGCSL CQEYRELKNR GLDMGIGWEA NVDRQRRGLT LPPVVVQGMT K

Best Arabidopsis Sequence Match ( AT1G14870.1 )
(BLAST)

001: MEAQHLHAKP HAEGEWSTGF CDCFSDCKNC CITFWCPCIT FGQVAEIVDR GSTSCGTAGA LYALIAVVTG CACIYSCFYR GKMRAQYNIK GDDCTDCLKH
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR

Arabidopsis Description

PCR2PCR2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDU8]
SUBAcon: [mitochondrion,plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.