Factsheet for VIT_03s0063g00550.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g00570.t01	Wine grape	cytosol	67.59	80.66
VIT_03s0063g00560.t01	Wine grape	cytosol	75.93	75.58
Os02t0763000-01	Rice	plasma membrane	46.76	55.8
GSMUA_Achr6P02280_001	Banana	cytosol	45.37	53.85
EES05849	Sorghum	plastid	46.76	53.72
Zm00001d052171_P001	Maize	cytosol, mitochondrion, plastid	45.37	51.85
KRH50266	Soybean	cytosol, peroxisome, plastid	45.37	50.78
TraesCS6B01G351700.1	Wheat	plastid	43.52	50.27
TraesCS6D01G300700.1	Wheat	plastid	43.52	50.27
TraesCS6A01G321000.1	Wheat	plastid	43.52	50.27
VIT_01s0011g05430.t01	Wine grape	plastid	41.67	50.0
VIT_01s0011g05440.t01	Wine grape	plastid	41.67	50.0
KRH71150	Soybean	cytosol	44.44	49.23
KRH71889	Soybean	cytosol	37.96	45.81
VIT_01s0011g05470.t01	Wine grape	cytosol, plastid	42.13	45.27
VIT_01s0011g03240.t01	Wine grape	extracellular, plastid	35.19	44.71
VIT_01s0011g03260.t01	Wine grape	plastid	41.67	43.06
VIT_01s0011g03250.t01	Wine grape	cytosol	12.04	41.27
VIT_01s0011g05450.t01	Wine grape	mitochondrion	38.89	37.67
VIT_09s0002g04180.t01	Wine grape	cytosol	26.85	30.05
VIT_01s0011g05420.t01	Wine grape	cytosol	37.96	29.71
VIT_17s0000g03960.t01	Wine grape	cytosol, nucleus, plastid	36.57	25.24
VIT_14s0006g03190.t01	Wine grape	cytosol, nucleus, plastid	35.19	24.13
VIT_08s0040g00140.t01	Wine grape	extracellular, plasma membrane, plastid	15.28	23.4

Protein Annotations

EntrezGene:100253696	wikigene:100253696	MapMan:35.1	ProteinID:CBI32421	ProteinID:CBI32421.3	UniProt:D7TPJ8
EMBL:FN596006	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100253696	wikigene:LOC100253696
PFAM:PF04749	InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF92	TIGRFAMs:TIGR01571	TMHMM:TMhelix
UniParc:UPI0001BE3B3A	ArrayExpress:VIT_03s0063g00550	EnsemblPlantsGene:VIT_03s0063g00550	EnsemblPlants:VIT_03s0063g00550.t01	RefSeq:XP_002282134	RefSeq:XP_002282134.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:4060669..4066802

Molecular Weight (calculated)

23906.4 Da

IEP (calculated)

7.101

GRAVY (calculated)

-0.123

Length

216 amino acids

Sequence
(BLAST)

001: MTRFWSSWHG VWKIYTRKDL EAAIGDQFIS VAEMYHGHSD HEKYGAGGHV GHATAPGFQN PSPAPPPRYA APYVVQYPGG TIRWSSGLCH CCDDPANFLI
101: TCVCPCITFG QIAEIVSKGS SNCAVSGTIY TVLCFIGLPC LYSCVYRSRL RAQYDLEESP CVDCLVHFFC EACSLCQEYR ELKSRGFDMG IGWEANADRQ
201: RRGITVPPAV AQGMNR

Best Arabidopsis Sequence Match ( AT3G18460.1 )
(BLAST)

001: MGRPGSQPNE AQPPPVQVQP TVNRDNQVHS QNGAIGQANI QTGRPVNNQT QNLWSSDLFD CMNDSENAVI TCLAPCVTLG QIAEIVDEGA TPCATGGLLY
101: GMIFFIGVPF VYSCMFRAKM RNKYGLPDAP APDWITHLFC EHCALCQEYR ELKHRGFDPN IGWAGNVQAQ QPVMSPPTGQ RMMG

Arabidopsis Description

PCR4Protein PLANT CADMIUM RESISTANCE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS44]
SUBAcon: [plastid,extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.