Factsheet for VIT_03s0063g00560.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g00570.t01	Wine grape	cytosol	70.05	83.98
VIT_03s0063g00550.t01	Wine grape	cytosol	75.58	75.93
Os02t0763000-01	Rice	plasma membrane	45.16	54.14
GSMUA_Achr6P02280_001	Banana	cytosol	44.24	52.75
KRH50266	Soybean	cytosol, peroxisome, plastid	46.08	51.81
EES05849	Sorghum	plastid	43.78	50.53
TraesCS6A01G321000.1	Wheat	plastid	43.32	50.27
TraesCS6B01G351700.1	Wheat	plastid	43.32	50.27
TraesCS6D01G300700.1	Wheat	plastid	43.32	50.27
KRH71150	Soybean	cytosol	45.16	50.26
Zm00001d052171_P001	Maize	cytosol, mitochondrion, plastid	42.86	49.21
VIT_01s0011g05430.t01	Wine grape	plastid	40.55	48.89
VIT_01s0011g05440.t01	Wine grape	plastid	40.55	48.89
VIT_01s0011g05470.t01	Wine grape	cytosol, plastid	43.32	46.77
VIT_01s0011g03240.t01	Wine grape	extracellular, plastid	35.94	45.88
KRH71889	Soybean	cytosol	37.79	45.81
VIT_01s0011g03260.t01	Wine grape	plastid	43.32	44.98
VIT_01s0011g03250.t01	Wine grape	cytosol	11.98	41.27
VIT_01s0011g05450.t01	Wine grape	mitochondrion	40.55	39.46
VIT_09s0002g04180.t01	Wine grape	cytosol	26.73	30.05
VIT_01s0011g05420.t01	Wine grape	cytosol	37.33	29.35
VIT_14s0006g03190.t01	Wine grape	cytosol, nucleus, plastid	35.94	24.76
VIT_17s0000g03960.t01	Wine grape	cytosol, nucleus, plastid	34.1	23.64
VIT_08s0040g00140.t01	Wine grape	extracellular, plasma membrane, plastid	14.75	22.7

Protein Annotations

EntrezGene:100264017	wikigene:100264017	MapMan:35.1	EMBL:AM460282	ProteinID:CAN70201	ProteinID:CAN70201.1
ProteinID:CBI32422	ProteinID:CBI32422.3	UniProt:D7TPJ9	EMBL:FN596006	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100264017	wikigene:LOC100264017	PFAM:PF04749	InterPro:PLAC_motif_containing	PANTHER:PTHR15907
PANTHER:PTHR15907:SF92	TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI0001BE3B3B	ArrayExpress:VIT_03s0063g00560	EnsemblPlantsGene:VIT_03s0063g00560
EnsemblPlants:VIT_03s0063g00560.t01	RefSeq:XP_002282121	RefSeq:XP_002282121.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:4067224..4070468

Molecular Weight (calculated)

23579.2 Da

IEP (calculated)

6.131

GRAVY (calculated)

-0.032

Length

217 amino acids

Sequence
(BLAST)

001: MMILIYEIKE QKSTKQDLEA AIADQLISVA EMNHSHSEHE VYGADRHVGH ASAPGFPNPS PAAPPPAPAY AAPYFVQFGG GTRRWSTGLC HCCDDAANCL
101: ITCCCPCITF GQIAEIVSKG SSNCAVSGAL YALLCLTGLA CLYSCAYRSR MRAQYDLEDA PCVDCLVHVF CEGCSLCQEY RELKNRGFDM GIGWEANVDR
201: QRRGITLPPV VAQGMTR

Best Arabidopsis Sequence Match ( AT1G49030.1 )
(BLAST)

001: MGRPDQTPSP RMNNNFNPVF HAQSEQPVDE KRVLQAEQIY PNNGGVVNQP NQVPMRPGPP TYINQSATFN QPYGVSMAGP VHTQPSNWTS GLFDCMNDGE
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG

Arabidopsis Description

PCR6Protein PLANT CADMIUM RESISTANCE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.