Factsheet for VIT_01s0011g05450.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plasma membrane 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026181.1-P	Field mustard	cytosol	39.91	58.94
CDY45296	Canola	cytosol	39.91	58.94
CDY51779	Canola	endoplasmic reticulum, extracellular	26.01	58.59
CDX81680	Canola	cytosol	39.01	57.62
CDY33731	Canola	cytosol	39.01	57.62
Bra026796.1-P	Field mustard	cytosol	38.56	56.95
CDY33732	Canola	cytosol	38.56	56.95
CDY71864	Canola	cytosol	38.12	56.29
AT1G14870.1	Thale cress	cytosol, mitochondrion, plasma membrane	37.67	55.26
VIT_01s0011g05430.t01	Wine grape	plastid	44.39	55.0
VIT_01s0011g05440.t01	Wine grape	plastid	43.95	54.44
AT5G35525.1	Thale cress	cytosol	36.77	53.95
Bra026794.1-P	Field mustard	cytosol, plastid, vacuole	35.43	53.74
CDX81682	Canola	cytosol, plastid, vacuole	34.98	53.06
CDY33730	Canola	cytosol	35.43	52.32
CDX81681	Canola	cytosol, plasma membrane, plastid	37.67	51.85
AT1G14880.1	Thale cress	cytosol	34.98	51.66
VIT_01s0011g05470.t01	Wine grape	cytosol, plastid	45.74	50.75
VIT_01s0011g03260.t01	Wine grape	plastid	43.05	45.93
VIT_03s0063g00570.t01	Wine grape	cytosol	36.32	44.75
VIT_01s0011g03250.t01	Wine grape	cytosol	12.56	44.44
VIT_01s0011g03240.t01	Wine grape	extracellular, plastid	31.39	41.18
VIT_03s0063g00560.t01	Wine grape	cytosol	39.46	40.55
VIT_03s0063g00550.t01	Wine grape	cytosol	37.67	38.89
Bra026795.1-P	Field mustard	extracellular	36.32	37.67
VIT_01s0011g05420.t01	Wine grape	cytosol	42.15	34.06
VIT_09s0002g04180.t01	Wine grape	cytosol	26.46	30.57
VIT_17s0000g03960.t01	Wine grape	cytosol, nucleus, plastid	34.98	24.92
VIT_08s0040g00140.t01	Wine grape	extracellular, plasma membrane, plastid	15.25	24.11
VIT_14s0006g03190.t01	Wine grape	cytosol, nucleus, plastid	32.74	23.17
Os02t0286933-00	Rice	cytosol, nucleus, plastid	8.07	16.22

Protein Annotations

EntrezGene:100256086	wikigene:100256086	MapMan:35.1	ProteinID:CBI26855	ProteinID:CBI26855.3	UniProt:D7T8N4
EMBL:FN595752	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139
GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015074	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100256086	wikigene:LOC100256086	PFAM:PF04749	InterPro:PLAC_motif_containing	PANTHER:PTHR15907
PANTHER:PTHR15907:SF92	TIGR:TC62104	TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI0001BE2E47	ArrayExpress:VIT_01s0011g05450
EnsemblPlantsGene:VIT_01s0011g05450	EnsemblPlants:VIT_01s0011g05450.t01	unigene:Vvi.1219	RefSeq:XP_002284811	RefSeq:XP_002284811.1	:

Description

No Description!

Coordinates

chr1:-:5109752..5118063

Molecular Weight (calculated)

24476.5 Da

IEP (calculated)

8.133

GRAVY (calculated)

-0.129

Length

223 amino acids

Sequence
(BLAST)

001: MIKPKGTNSA LLQISFHRPN SLVVPLPSPQ APFDIYIYTP NHQVISVPSP PHPFSKLAMA IDTPANPTHV SHVRNSPRQV QPGAKVPWST GLCDCFSDVP
101: NCCMTFWCPC VTFGRIAEIV DSGSSSCALN GLLYTLVAFT TGCACLCSCF NRSKMRKQYK LEGNDCKDCL AHYFCEACAL CQEYRELKNR GFDMTLGWHG
201: NMQKQGSTPA ATTVPAVEGG MYR

Best Arabidopsis Sequence Match ( AT1G14870.1 )
(BLAST)

001: MEAQHLHAKP HAEGEWSTGF CDCFSDCKNC CITFWCPCIT FGQVAEIVDR GSTSCGTAGA LYALIAVVTG CACIYSCFYR GKMRAQYNIK GDDCTDCLKH
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR

Arabidopsis Description

PCR2PCR2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDU8]
SUBAcon: [mitochondrion,plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.