CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33731	Canola	cytosol	98.01	98.01
CDY71864	Canola	cytosol	91.39	91.39
CDY33732	Canola	cytosol	91.39	91.39
CDY45296	Canola	cytosol	86.75	86.75
AT1G14870.1	Thale cress	cytosol, mitochondrion, plasma membrane	86.09	85.53
CDY51779	Canola	endoplasmic reticulum, extracellular	53.64	81.82
AT5G35525.1	Thale cress	cytosol	76.82	76.32
AT1G14880.1	Thale cress	cytosol	74.17	74.17
CDX81682	Canola	cytosol, plastid, vacuole	67.55	69.39
CDY33730	Canola	cytosol	64.24	64.24
Bra026795.1-P	Field mustard	extracellular	86.09	60.47
CDX81681	Canola	cytosol, plasma membrane, plastid	64.24	59.88
KRH47639	Soybean	endoplasmic reticulum, extracellular	36.42	59.78
Solyc04g007900.2.1	Tomato	nucleus	60.93	49.46
KRH41677	Soybean	extracellular	56.95	49.14
KRH60380	Soybean	plastid	59.6	48.39
PGSC0003DMT400075916	Potato	cytosol, endoplasmic reticulum, nucleus	60.26	47.89
KRH60379	Soybean	cytosol, plastid, vacuole	58.28	46.07
CDY24480	Canola	cytosol, extracellular, vacuole	38.41	43.61
CDX92238	Canola	plasma membrane	38.41	43.61
CDX96001	Canola	cytosol	45.7	42.33
CDY62851	Canola	cytosol, extracellular, plasma membrane	41.72	40.13
VIT_01s0011g05450.t01	Wine grape	mitochondrion	57.62	39.01
CDY29143	Canola	cytosol	38.41	38.67
CDX92237	Canola	cytosol	43.71	38.15
CDY48592	Canola	plastid	43.05	37.14
CDY70500	Canola	cytosol	37.75	36.77
CDY71552	Canola	plastid	44.37	33.17
CDY39895	Canola	cytosol	35.1	32.52
CDY04241	Canola	cytosol	33.77	31.68
CDY07373	Canola	cytosol	33.77	31.68
CDY62854	Canola	cytosol	44.37	30.73
CDX96000	Canola	plasma membrane	31.79	29.81
CDY38607	Canola	plasma membrane	31.79	29.81
CDY53672	Canola	cytosol	33.77	27.27
CDY57571	Canola	cytosol	34.44	27.08
CDY06953	Canola	cytosol	33.77	26.42
CDY57415	Canola	cytosol	33.77	26.42
CDY38687	Canola	cytosol	34.44	25.49
Os02t0286933-00	Rice	cytosol, nucleus, plastid	6.62	9.01

Protein Annotations

EnsemblPlants:CDX81680	EnsemblPlantsGene:GSBRNA2T00136602001	GO:A0A078CXX8	InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF96
PFAM:PF04749	ProteinID:CDX81680	ProteinID:CDX81680.1	TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI0004EE5820
MapMan:35.1	:	:	:	:	:

Description

BnaC08g39210D

Coordinates

chrLK031826:-:342609..343643

Molecular Weight (calculated)

16597.7 Da

IEP (calculated)

5.112

GRAVY (calculated)

-0.215

Length

151 amino acids

Sequence
(BLAST)

001: MEAQHLQGKP QAEGEWSTGF CDCFSDCKNC CITCWCPCIT FGQVAEIVDQ GSTTCGTAGA LYALINAVTG CACIYSCFYR GKMRAQYNIE GSDCGDCLKH
101: FFCELCALTQ QYRELKNRGF NMDLGWAGNV QRQQNQGAEM GAPVFQGGMN R

Best Arabidopsis Sequence Match ( AT1G14870.1 )
(BLAST)

001: MEAQHLHAKP HAEGEWSTGF CDCFSDCKNC CITFWCPCIT FGQVAEIVDR GSTSCGTAGA LYALIAVVTG CACIYSCFYR GKMRAQYNIK GDDCTDCLKH
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR

Arabidopsis Description

PCR2PCR2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDU8]
SUBAcon: [mitochondrion,plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.