Factsheet for PGSC0003DMT400075916

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 1
plastid 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g007900.2.1	Tomato	nucleus	91.58	93.55
KRH47639	Soybean	endoplasmic reticulum, extracellular	33.16	68.48
PGSC0003DMT400040788	Potato	cytosol	23.16	66.67
AT1G14870.1	Thale cress	cytosol, mitochondrion, plasma membrane	48.42	60.53
Bra026796.1-P	Field mustard	cytosol	47.89	60.26
CDX81680	Canola	cytosol	47.89	60.26
CDY33731	Canola	cytosol	47.89	60.26
CDY33732	Canola	cytosol	47.37	59.6
CDY71864	Canola	cytosol	47.37	59.6
Bra026181.1-P	Field mustard	cytosol	46.32	58.28
CDY45296	Canola	cytosol	46.32	58.28
VIT_01s0011g05470.t01	Wine grape	cytosol, plastid	60.53	57.21
CDY51779	Canola	endoplasmic reticulum, extracellular	29.47	56.57
PGSC0003DMT400081921	Potato	cytosol, plasma membrane, plastid	48.42	56.1
AT5G35525.1	Thale cress	cytosol	44.21	55.26
AT1G14880.1	Thale cress	cytosol	43.68	54.97
KRH41677	Soybean	extracellular	49.47	53.71
KRH60380	Soybean	plastid	51.58	52.69
Bra026794.1-P	Field mustard	cytosol, plastid, vacuole	40.53	52.38
CDX81682	Canola	cytosol, plastid, vacuole	39.47	51.02
CDY33730	Canola	cytosol	40.53	50.99
PGSC0003DMT400056038	Potato	cytosol, extracellular, plastid	36.84	46.98
CDX81681	Canola	cytosol, plasma membrane, plastid	40.0	46.91
KRH60379	Soybean	cytosol, plastid, vacuole	46.84	46.6
PGSC0003DMT400033759	Potato	cytosol	31.05	40.97
Bra026795.1-P	Field mustard	extracellular	45.26	40.0
PGSC0003DMT400006535	Potato	cytosol, extracellular, plastid	23.16	36.67
PGSC0003DMT400042614	Potato	cytosol, mitochondrion, peroxisome	30.53	31.69
PGSC0003DMT400072265	Potato	mitochondrion	28.95	29.26
PGSC0003DMT400014354	Potato	cytosol, endoplasmic reticulum, nucleus	42.11	18.69
Os02t0286933-00	Rice	cytosol, nucleus, plastid	7.37	12.61
PGSC0003DMT400014896	Potato	nucleus, plastid	21.05	10.55

Protein Annotations

EnsemblPlants:PGSC0003DMT400075916	EnsemblPlantsGene:PGSC0003DMG400029518	EntrezGene:102582545	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF96	PFAM:PF04749	PGSC:PGSC0003DMG400029518	RefSeq:XP_006355072.1
TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI000294CA3E	UniProt:M1CVX8	MapMan:35.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029518]

Coordinates

chr4:+:2539287..2542122

Molecular Weight (calculated)

21333.8 Da

IEP (calculated)

8.024

GRAVY (calculated)

-0.286

Length

190 amino acids

Sequence
(BLAST)

001: MKSSTSSLSD RYQKFSSFGD ETPSPINVMR SSKTPFYVET MDPQPAMYRK KKNDVPWSTG LCDCMSDPKN CCITLWCPCI TFGQVAEIID KGSNSCGVNG
101: ALYAIIICVT CCPCCYSCFY RNKMRQQYLL KKNPCGDCLV HCFCEACALC QEYRELKNRG VDMSIGWHGN VERQNRGVII PPTVEGGMSR

Best Arabidopsis Sequence Match ( AT1G14870.1 )
(BLAST)

001: MEAQHLHAKP HAEGEWSTGF CDCFSDCKNC CITFWCPCIT FGQVAEIVDR GSTSCGTAGA LYALIAVVTG CACIYSCFYR GKMRAQYNIK GDDCTDCLKH
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR

Arabidopsis Description

PCR2PCR2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDU8]
SUBAcon: [mitochondrion,plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.