Factsheet for PGSC0003DMT400072265

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081410.1.1	Tomato	cytosol	96.81	96.81
GSMUA_Achr6P32110_001	Banana	extracellular, peroxisome, plasma membrane	63.3	63.3
KRH77728	Soybean	extracellular	62.23	63.24
VIT_08s0040g00140.t01	Wine grape	extracellular, plasma membrane, plastid	47.34	63.12
KRH27778	Soybean	extracellular, nucleus, plasma membrane	62.77	62.77
AT2G40935.9	Thale cress	cytosol	62.23	61.58
HORVU3Hr1G037940.1	Barley	cytosol	59.57	60.87
CDY53672	Canola	cytosol	60.11	60.43
EES02743	Sorghum	cytosol	58.51	60.11
Bra016960.1-P	Field mustard	cytosol	61.7	60.1
CDY57571	Canola	cytosol	61.17	59.9
CDY06953	Canola	cytosol	61.17	59.59
TraesCS3D01G188300.1	Wheat	extracellular	57.98	59.24
TraesCS3A01G184200.2	Wheat	extracellular	57.98	59.24
CDY57415	Canola	cytosol	60.64	59.07
Zm00001d008282_P003	Maize	cytosol, extracellular, plasma membrane	57.45	58.7
TraesCS3B01G214000.1	Wheat	cytosol	57.45	58.7
Os01t0267400-01	Rice	cytosol, extracellular, plastid	44.15	56.46
GSMUA_Achr9P05180_001	Banana	endoplasmic reticulum, extracellular	43.09	52.94
PGSC0003DMT400040788	Potato	cytosol	13.3	37.88
PGSC0003DMT400081921	Potato	cytosol, plasma membrane, plastid	28.72	32.93
PGSC0003DMT400056038	Potato	cytosol, extracellular, plastid	23.94	30.2
PGSC0003DMT400006535	Potato	cytosol, extracellular, plastid	19.15	30.0
PGSC0003DMT400075916	Potato	cytosol, endoplasmic reticulum, nucleus	29.26	28.95
PGSC0003DMT400033759	Potato	cytosol	21.28	27.78
PGSC0003DMT400042614	Potato	cytosol, mitochondrion, peroxisome	25.0	25.68
PGSC0003DMT400014354	Potato	cytosol, endoplasmic reticulum, nucleus	26.06	11.45
PGSC0003DMT400014896	Potato	nucleus, plastid	15.43	7.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400072265	EnsemblPlantsGene:PGSC0003DMG400028123	EntrezGene:102598988	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PFAM:PF04749	PGSC:PGSC0003DMG400028123	RefSeq:XP_006339208.1	RefSeq:XP_015165602.1
TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI0002961BC5	UniProt:M1CPZ4	MapMan:35.1	:

Description

Cell number regulator 5 [Source:PGSC_GENE;Acc:PGSC0003DMG400028123]

Coordinates

chr10:-:56552933..56558088

Molecular Weight (calculated)

20777.6 Da

IEP (calculated)

4.754

GRAVY (calculated)

-0.040

Length

188 amino acids

Sequence
(BLAST)

001: MVGHKNYSPP PYIPLDQSDA EVPQVSTAEE IQQTKKDDHA QWSSGICACF DDPQSCFIGL LCPCFLFGKN ADFLGSGTLM GSCTTHFILW AFFNTIFCFL
101: TEGILLGLPG CFVACYACGY RKTLRSKYNL QEAPCGDFAT HFFCHLCAIC QEYREIHERS GDSNSSDLSL VAVTAPQVQK METPPANE

Best Arabidopsis Sequence Match ( AT2G40935.8 )
(BLAST)

001: MKEKKGHYVP PSYIPLTQSD ADTEVETTTP NLEIAVSEST KDDPRQWSSG ICACFDDMQS CCVGLFCPCY IFGKNAELLG SGTFAGPCLT HCISWALVNT
101: ICCFATNGAL LGLPGCFVSC YACGYRKSLR AKYNLQEAPC GDFVTHFFCH LCAICQEYRE IREQSSGSYP LDMKMAITNA PLAQTMESAN

Arabidopsis Description

PCR10Protein PLANT CADMIUM RESISTANCE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8T8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.