Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- mitochondrion 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc06g066590.2.1 | Tomato | cytosol, nucleus, peroxisome | 96.17 | 96.17 |
PGSC0003DMT400006535 | Potato | cytosol, extracellular, plastid | 56.83 | 86.67 |
KRH09890 | Soybean | cytosol | 60.11 | 65.48 |
Bra018953.1-P | Field mustard | plastid | 56.28 | 54.79 |
AT1G52200.1 | Thale cress | plastid | 56.83 | 54.74 |
VIT_09s0002g04180.t01 | Wine grape | cytosol | 57.38 | 54.4 |
PGSC0003DMT400040788 | Potato | cytosol | 14.21 | 39.39 |
PGSC0003DMT400033759 | Potato | cytosol | 30.05 | 38.19 |
PGSC0003DMT400081921 | Potato | cytosol, plasma membrane, plastid | 32.79 | 36.59 |
GSMUA_Achr5P22960_001 | Banana | plastid | 50.27 | 34.2 |
PGSC0003DMT400056038 | Potato | cytosol, extracellular, plastid | 27.32 | 33.56 |
PGSC0003DMT400075916 | Potato | cytosol, endoplasmic reticulum, nucleus | 31.69 | 30.53 |
PGSC0003DMT400072265 | Potato | mitochondrion | 25.68 | 25.0 |
GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 49.73 | 21.77 |
PGSC0003DMT400014354 | Potato | cytosol, endoplasmic reticulum, nucleus | 39.34 | 16.82 |
PGSC0003DMT400014896 | Potato | nucleus, plastid | 20.77 | 10.03 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400042614 | EnsemblPlantsGene:PGSC0003DMG400016529 | EntrezGene:102604879 | InterPro:PLAC_motif_containing | PANTHER:PTHR15907 | PANTHER:PTHR15907:SF46 |
PFAM:PF04749 | PGSC:PGSC0003DMG400016529 | RefSeq:XP_006356149.1 | TIGRFAMs:TIGR01571 | UniParc:UPI0002968616 | UniProt:M1BDC6 |
MapMan:35.1 | : | : | : | : | : |
Description
Uncharacterized Cys-rich domain [Source:PGSC_GENE;Acc:PGSC0003DMG400016529]
Coordinates
chr6:-:49252743..49254335
Molecular Weight (calculated)
20328.3 Da
IEP (calculated)
4.845
GRAVY (calculated)
-0.275
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVEANNEE ETSQAESGTE PAASQPQQLQ GVQGVYQSPP HLTIGAPWST GLFDCHLDQT NAVMTAFLPC VTFGQIAEVL DAGQMTCPLG TFIYMLMMPA
101: ICSQWIMGSK YRTQLRQRYN LVEAPYSDMI SHMFCPCCSL CQEFRELRNR GLDPALGWNG IVAQQHYGNQ QVNQAPQVQS MSK
101: ICSQWIMGSK YRTQLRQRYN LVEAPYSDMI SHMFCPCCSL CQEFRELRNR GLDPALGWNG IVAQQHYGNQ QVNQAPQVQS MSK
001: MGRVTTPSEE DSNNGLPVQQ PGTPNQRTRV PVSQFAPPNY QQANVNLSVG RPWSTGLFDC QADQANAVLT TIVPCVTFGQ IAEVMDEGEM TCPLGTFMYL
101: LMMPALCSHW VMGSKYREKM RRKFNLVEAP YSDCASHVLC PCCSLCQEYR ELKIRNLDPS LGWNGILAQG QGQYEREAPS FAPTNQYMSK
101: LMMPALCSHW VMGSKYREKM RRKFNLVEAP YSDCASHVLC PCCSLCQEYR ELKIRNLDPS LGWNGILAQG QGQYEREAPS FAPTNQYMSK
Arabidopsis Description
PCR8Protein PLANT CADMIUM RESISTANCE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M815]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.