Factsheet for PGSC0003DMT400014354

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49030.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g119660.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	86.22	89.13
CDY62851	Canola	cytosol, extracellular, plasma membrane	20.09	54.78
AT3G18460.1	Thale cress	cytosol, extracellular, nucleus, plastid	22.66	52.72
CDY48592	Canola	plastid	21.26	52.0
PGSC0003DMT400040788	Potato	cytosol	7.71	50.0
CDY70500	Canola	cytosol	17.76	49.03
CDX92237	Canola	cytosol	19.63	48.55
Bra022322.1-P	Field mustard	cytosol	19.39	47.98
AT1G49030.1	Thale cress	cytosol	25.0	47.77
PGSC0003DMT400081921	Potato	cytosol, plasma membrane, plastid	18.22	47.56
CDY71552	Canola	plastid	22.2	47.03
AT3G18450.1	Thale cress	plastid	19.39	45.11
CDY62854	Canola	cytosol	22.66	44.5
PGSC0003DMT400006535	Potato	cytosol, extracellular, plastid	12.38	44.17
Bra018774.1-P	Field mustard	cytosol	23.13	43.81
PGSC0003DMT400056038	Potato	cytosol, extracellular, plastid	15.19	43.62
PGSC0003DMT400075916	Potato	cytosol, endoplasmic reticulum, nucleus	18.69	42.11
PGSC0003DMT400042614	Potato	cytosol, mitochondrion, peroxisome	16.82	39.34
PGSC0003DMT400033759	Potato	cytosol	12.62	37.5
VIT_17s0000g03960.t01	Wine grape	cytosol, nucleus, plastid	27.1	37.06
VIT_14s0006g03190.t01	Wine grape	cytosol, nucleus, plastid	26.87	36.51
PGSC0003DMT400072265	Potato	mitochondrion	11.45	26.06
PGSC0003DMT400014896	Potato	nucleus, plastid	10.98	12.4

Protein Annotations

EnsemblPlants:PGSC0003DMT400014354	EnsemblPlantsGene:PGSC0003DMG400005629	EntrezGene:102600212	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF49	PFAM:PF04749	PGSC:PGSC0003DMG400005629	RefSeq:XP_006341625.1
SEG:seg	TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI00029662F2	UniProt:M1A425	MapMan:35.1

Description

Structural constituent of cell wall [Source:PGSC_GENE;Acc:PGSC0003DMG400005629]

Coordinates

chr3:-:59041190..59043435

Molecular Weight (calculated)

47952.2 Da

IEP (calculated)

5.292

GRAVY (calculated)

-0.760

Length

428 amino acids

Sequence
(BLAST)

001: MGRIGAKPIH QFQVQHQNDN DQHQLQPHQV ESFDHYQAPE TIDEIPPPSI ESFHEDLYPE ENQDEPSQEL TMASESQENQ HSVLQQQYVQ AAPQPMSRPV
101: TTQVSQQNGK TQRPRKQPKP KSPLHPSQHN SFPIHDPQPQ AEAFPPPQSQ PLPHPFPPAQ DYYEPGTFPP TQEEEEEHAF PPTVPQAFPP AQDSYEPQGF
201: HPTPNKAHAF PPPQVDPQLY SPQARPHAFV PQNHNVPVFT NSKPQAGTNF PQYSLAQGSQ LGMGMGQYQQ GTQPASPMMG IPFKPLLPTE SWKTGLFDCM
301: EDPTNALITA CFPCLTFGQI AEIVDSGQTP CTTSGFIYGA ILMFIGMPCI MSCTYRTKMR SQYGLIESPA PDWVIHCFCE CCALCQEYRE LHHRGLDPSI
401: GWQGNQAQKQ NMQLQQATMV PPVHQAMG

Best Arabidopsis Sequence Match ( AT1G49030.1 )
(BLAST)

001: MGRPDQTPSP RMNNNFNPVF HAQSEQPVDE KRVLQAEQIY PNNGGVVNQP NQVPMRPGPP TYINQSATFN QPYGVSMAGP VHTQPSNWTS GLFDCMNDGE
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG

Arabidopsis Description

PCR6Protein PLANT CADMIUM RESISTANCE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.