Factsheet for Solyc03g119660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49030.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014354	Potato	cytosol, endoplasmic reticulum, nucleus	89.13	86.22
CDY62851	Canola	cytosol, extracellular, plasma membrane	21.5	56.69
CDY48592	Canola	plastid	22.71	53.71
AT3G18460.1	Thale cress	cytosol, extracellular, nucleus, plastid	23.67	53.26
CDX92237	Canola	cytosol	20.77	49.71
CDY70500	Canola	cytosol	18.6	49.68
Bra022322.1-P	Field mustard	cytosol	20.53	49.13
AT1G49030.1	Thale cress	cytosol	26.33	48.66
CDY71552	Canola	plastid	22.95	47.03
Solyc01g005470.2.1	Tomato	extracellular	18.36	46.34
AT3G18450.1	Thale cress	plastid	20.29	45.65
Solyc12g037950.1.1	Tomato	extracellular	16.43	45.64
CDY62854	Canola	cytosol	23.67	44.95
Bra018774.1-P	Field mustard	cytosol	24.15	44.25
Solyc02g090730.2.1	Tomato	plastid	16.67	42.33
Solyc04g007900.2.1	Tomato	nucleus	18.84	41.94
Solyc03g120600.2.1	Tomato	cytosol, peroxisome, plastid	17.39	41.86
Solyc06g066590.2.1	Tomato	cytosol, nucleus, peroxisome	17.39	39.34
VIT_14s0006g03190.t01	Wine grape	cytosol, nucleus, plastid	28.74	37.78
Solyc12g013570.1.1	Tomato	cytosol	12.08	37.59
VIT_17s0000g03960.t01	Wine grape	cytosol, nucleus, plastid	27.78	36.74
Solyc05g009620.2.1	Tomato	plastid	8.7	36.73
Solyc08g013920.2.1	Tomato	cytosol, plasma membrane, plastid	14.73	27.85
Solyc08g013910.2.1	Tomato	cytosol	11.84	26.34
Solyc10g081410.1.1	Tomato	cytosol	11.84	26.06

Protein Annotations

EnsemblPlants:Solyc03g119660.1.1	EnsemblPlantsGene:Solyc03g119660.1	InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF49	PFAM:PF04749
SEG:seg	TIGRFAMs:TIGR01571	UniParc:UPI00027667AC	UniProt:K4BMB5	MapMan:35.1	:

Description

No Description!

Coordinates

chr3:-:68225720..68227351

Molecular Weight (calculated)

46489.6 Da

IEP (calculated)

5.289

GRAVY (calculated)

-0.738

Length

414 amino acids

Sequence
(BLAST)

001: MGRIGAKPIH QFQVQNQNDQ HPLQPRQDYA SQVESFDYYQ APETIDEIPP PSIESFHEDL YPEESQDEPS QELTMQSESH ENHEDSVQQQ QYVQAVTTQV
101: SQQNGKTQRP RKQPKPKSGT LRSPIHPSQH NSFPIHDPQP QAEAFSTPQS QPQPHPFPPA QDYNEPHTFP PMQEEAFPPA QDSYEPHSFP PTPNKVHAFP
201: PPQVDPQLYS RPHAFVPQNH NVPVFASSQP QAGTNFPQHS LAQGSQIGMG MGQYQQGMQP APPMMGIPFK PILPTESWKT GLFDCMEDPT NALITACFPC
301: LTFGQIAEIV DSGQTPCTTS GLIYGAILMF IGMPCIMSCT YRTKLRSQYG LMESPAPDWV IHCFCECCAL CQEYRELHHR GLDPSIGWQG NQAQKQNMQL
401: QQAMVPPVHQ AMMG

Best Arabidopsis Sequence Match ( AT1G49030.1 )
(BLAST)

001: MGRPDQTPSP RMNNNFNPVF HAQSEQPVDE KRVLQAEQIY PNNGGVVNQP NQVPMRPGPP TYINQSATFN QPYGVSMAGP VHTQPSNWTS GLFDCMNDGE
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG

Arabidopsis Description

PCR6Protein PLANT CADMIUM RESISTANCE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.