Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g037950.1.1 | Tomato | extracellular | 26.94 | 39.6 |
| Solyc12g013570.1.1 | Tomato | cytosol | 23.74 | 39.1 |
| Solyc02g090730.2.1 | Tomato | plastid | 28.77 | 38.65 |
| Solyc01g005470.2.1 | Tomato | extracellular | 28.77 | 38.41 |
| Solyc08g013910.2.1 | Tomato | cytosol | 28.77 | 33.87 |
| Solyc04g007900.2.1 | Tomato | nucleus | 27.85 | 32.8 |
| Solyc05g009620.2.1 | Tomato | plastid | 13.7 | 30.61 |
| Solyc06g066590.2.1 | Tomato | cytosol, nucleus, peroxisome | 25.11 | 30.05 |
| Solyc03g120600.2.1 | Tomato | cytosol, peroxisome, plastid | 23.29 | 29.65 |
| Solyc10g081410.1.1 | Tomato | cytosol | 20.55 | 23.94 |
| Solyc03g119660.1.1 | Tomato | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 27.85 | 14.73 |
Protein Annotations
| EnsemblPlants:Solyc08g013920.2.1 | EnsemblPlantsGene:Solyc08g013920.2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:PLAC_motif_containing |
| PANTHER:PTHR15907 | PANTHER:PTHR15907:SF92 | PFAM:PF04749 | SEG:seg | SUPFAM:SSF101447 | TIGRFAMs:TIGR01571 |
| TMHMM:TMhelix | UniParc:UPI000276B08F | UniProt:K4CJ26 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr8:+:3397226..3399733
Molecular Weight (calculated)
24499.5 Da
IEP (calculated)
7.207
GRAVY (calculated)
-0.268
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPLMNSNGY NQFVTNKPLD NNNNASSQSY SYPHLLPYGY GMPPPPPPPP PPSQPYGSPD GSSVYIQRAP IGITKHMEET TWSTNIFACG RDPKNCLTTC
101: VCPCITSGQI AEIVSEGRTS CMEGVIINML LCCLCCITPL YTFYYRVKLR RKFKLEGNEC LDCLIHTLCC YCALCQEYRE LHRQGFDPAL GWAENIERQS
201: HAVAVFTITP PPVQEAMKR
101: VCPCITSGQI AEIVSEGRTS CMEGVIINML LCCLCCITPL YTFYYRVKLR RKFKLEGNEC LDCLIHTLCC YCALCQEYRE LHRQGFDPAL GWAENIERQS
201: HAVAVFTITP PPVQEAMKR
001: MGRPDQTPSP RMNNNFNPVF HAQSEQPVDE KRVLQAEQIY PNNGGVVNQP NQVPMRPGPP TYINQSATFN QPYGVSMAGP VHTQPSNWTS GLFDCMNDGE
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG
Arabidopsis Description
PCR6Protein PLANT CADMIUM RESISTANCE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9A5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.