Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
- nucleus 1
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400081921 | Potato | cytosol, plasma membrane, plastid | 96.34 | 96.34 |
| VIT_01s0011g05440.t01 | Wine grape | plastid | 66.46 | 60.56 |
| VIT_01s0011g05430.t01 | Wine grape | plastid | 65.24 | 59.44 |
| Solyc02g090730.2.1 | Tomato | plastid | 53.66 | 53.99 |
| Solyc12g037950.1.1 | Tomato | extracellular | 44.51 | 48.99 |
| Solyc04g007900.2.1 | Tomato | nucleus | 55.49 | 48.92 |
| Solyc12g013570.1.1 | Tomato | cytosol | 37.8 | 46.62 |
| Solyc05g009620.2.1 | Tomato | plastid | 23.17 | 38.78 |
| Solyc03g120600.2.1 | Tomato | cytosol, peroxisome, plastid | 37.2 | 35.47 |
| VIT_01s0011g05420.t01 | Wine grape | cytosol | 58.54 | 34.78 |
| Solyc06g066590.2.1 | Tomato | cytosol, nucleus, peroxisome | 35.98 | 32.24 |
| Solyc08g013920.2.1 | Tomato | cytosol, plasma membrane, plastid | 38.41 | 28.77 |
| Solyc10g081410.1.1 | Tomato | cytosol | 32.93 | 28.72 |
| Solyc08g013910.2.1 | Tomato | cytosol | 29.88 | 26.34 |
| Solyc03g119660.1.1 | Tomato | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 46.34 | 18.36 |
Protein Annotations
| EnsemblPlants:Solyc01g005470.2.1 | EnsemblPlantsGene:Solyc01g005470.2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:PLAC_motif_containing |
| PANTHER:PTHR15907 | PANTHER:PTHR15907:SF92 | PFAM:PF04749 | TIGRFAMs:TIGR01571 | TMHMM:TMhelix | UniParc:UPI0002761AD1 |
| UniProt:K4ASB4 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:322628..324932
Molecular Weight (calculated)
17783.4 Da
IEP (calculated)
6.054
GRAVY (calculated)
-0.066
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPSAQPAYG EKPMTGVPVP GQFQANHPGN WSTGLCDCFS DISSCCLTCW CPCITFGQIA EIVDKGTVSC GASGALYFLI EALTGCGCIY SCFYRTKMRK
101: QYMLPESPCG DCLLHFCCEC CALCQEHREL KHRGYDMSIG WQGNMDNQNG GIAMAPGVQG GMTR
101: QYMLPESPCG DCLLHFCCEC CALCQEHREL KHRGYDMSIG WQGNMDNQNG GIAMAPGVQG GMTR
001: MEAQHLHAKP HAEGEWSTGF CDCFSDCKNC CITFWCPCIT FGQVAEIVDR GSTSCGTAGA LYALIAVVTG CACIYSCFYR GKMRAQYNIK GDDCTDCLKH
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR
Arabidopsis Description
PCR2PCR2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDU8]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.