Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
- nucleus 1
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g005470.2.1 | Tomato | extracellular | 96.34 | 96.34 |
| PGSC0003DMT400040788 | Potato | cytosol | 26.22 | 65.15 |
| VIT_01s0011g05440.t01 | Wine grape | plastid | 68.9 | 62.78 |
| VIT_01s0011g05430.t01 | Wine grape | plastid | 67.68 | 61.67 |
| PGSC0003DMT400075916 | Potato | cytosol, endoplasmic reticulum, nucleus | 56.1 | 48.42 |
| PGSC0003DMT400056038 | Potato | cytosol, extracellular, plastid | 42.07 | 46.31 |
| PGSC0003DMT400033759 | Potato | cytosol | 35.98 | 40.97 |
| PGSC0003DMT400006535 | Potato | cytosol, extracellular, plastid | 29.88 | 40.83 |
| VIT_01s0011g05420.t01 | Wine grape | cytosol | 60.37 | 35.87 |
| PGSC0003DMT400042614 | Potato | cytosol, mitochondrion, peroxisome | 36.59 | 32.79 |
| PGSC0003DMT400072265 | Potato | mitochondrion | 32.93 | 28.72 |
| PGSC0003DMT400014354 | Potato | cytosol, endoplasmic reticulum, nucleus | 47.56 | 18.22 |
| PGSC0003DMT400014896 | Potato | nucleus, plastid | 21.34 | 9.23 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400081921 | EnsemblPlantsGene:PGSC0003DMG400032160 | EntrezGene:102587513 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:PLAC_motif_containing | PANTHER:PTHR15907 | PANTHER:PTHR15907:SF92 | PFAM:PF04749 | PGSC:PGSC0003DMG400032160 | RefSeq:XP_006354110.1 |
| TIGRFAMs:TIGR01571 | TMHMM:TMhelix | UniParc:UPI000294DFE3 | UniProt:M1D5A7 | MapMan:35.1 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400032160]
Coordinates
chr1:-:1028157..1030063
Molecular Weight (calculated)
17878.6 Da
IEP (calculated)
6.449
GRAVY (calculated)
-0.092
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPSAQPAYG EKPMTGIPVP GQFQANHPGT WSTGLCDCFS DVPNCCLTCW CPCITFGQIA EIVDKGTVSC GASGALYFLI EALTGCGCIY SCFYRTKMRK
101: QYMLPESPCG DCLLHFCCEC CALCQEHREL KHRGYDMSIG WQGNMDNQNK GIAMAPGVQG GMTR
101: QYMLPESPCG DCLLHFCCEC CALCQEHREL KHRGYDMSIG WQGNMDNQNK GIAMAPGVQG GMTR
001: MEAQHLHAKP HAEGEWSTGF CDCFSDCKNC CITFWCPCIT FGQVAEIVDR GSTSCGTAGA LYALIAVVTG CACIYSCFYR GKMRAQYNIK GDDCTDCLKH
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR
Arabidopsis Description
PCR2PCR2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDU8]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.