Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0011g05430.t01 | Wine grape | plastid | 97.22 | 97.22 |
| PGSC0003DMT400081921 | Potato | cytosol, plasma membrane, plastid | 62.78 | 68.9 |
| Solyc01g005470.2.1 | Tomato | extracellular | 60.56 | 66.46 |
| VIT_01s0011g05470.t01 | Wine grape | cytosol, plastid | 62.78 | 56.22 |
| VIT_01s0011g05420.t01 | Wine grape | cytosol | 80.0 | 52.17 |
| VIT_03s0063g00570.t01 | Wine grape | cytosol | 49.44 | 49.17 |
| VIT_01s0011g03240.t01 | Wine grape | extracellular, plastid | 44.44 | 47.06 |
| VIT_01s0011g03260.t01 | Wine grape | plastid | 51.67 | 44.5 |
| VIT_01s0011g05450.t01 | Wine grape | mitochondrion | 54.44 | 43.95 |
| VIT_01s0011g03250.t01 | Wine grape | cytosol | 15.0 | 42.86 |
| VIT_03s0063g00550.t01 | Wine grape | cytosol | 50.0 | 41.67 |
| VIT_03s0063g00560.t01 | Wine grape | cytosol | 48.89 | 40.55 |
| VIT_09s0002g04180.t01 | Wine grape | cytosol | 33.33 | 31.09 |
| VIT_14s0006g03190.t01 | Wine grape | cytosol, nucleus, plastid | 43.89 | 25.08 |
| VIT_17s0000g03960.t01 | Wine grape | cytosol, nucleus, plastid | 42.22 | 24.28 |
| VIT_08s0040g00140.t01 | Wine grape | extracellular, plasma membrane, plastid | 16.67 | 21.28 |
Protein Annotations
| EntrezGene:100266435 | wikigene:100266435 | MapMan:35.1 | ProteinID:CCB50800 | ProteinID:CCB50800.1 | UniProt:F6HFF1 |
| EMBL:FN595752 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100266435 | wikigene:LOC100266435 |
| PFAM:PF04749 | InterPro:PLAC_motif_containing | PANTHER:PTHR15907 | PANTHER:PTHR15907:SF92 | TIGRFAMs:TIGR01571 | TMHMM:TMhelix |
| UniParc:UPI000198288D | ArrayExpress:VIT_01s0011g05440 | EnsemblPlantsGene:VIT_01s0011g05440 | EnsemblPlants:VIT_01s0011g05440.t01 | RefSeq:XP_002281061 | RefSeq:XP_002281061.2 |
| RefSeq:XP_002281081 | RefSeq:XP_002281081.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1:+:5089187..5104138
Molecular Weight (calculated)
19752.7 Da
IEP (calculated)
5.715
GRAVY (calculated)
-0.073
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MYQNDYQKFS ASPPPSAPPY TSSQPAMATG IPISSTGGLQ PGTEVPWSTG LCDCFSDVTN CCITCWCPCI TFGQIAEIVD KGTVSCFASG AIYAALTYFT
101: TCACLFSCSY RTKLRKQLML KESPCGDCLV HFCCETCSLC QEYRELTHRG FDMSLGWEGN MERQNRGVAM APVVERGMQR
101: TCACLFSCSY RTKLRKQLML KESPCGDCLV HFCCETCSLC QEYRELTHRG FDMSLGWEGN MERQNRGVAM APVVERGMQR
001: MEAQHLHAKP HAEGEWSTGF CDCFSDCKNC CITFWCPCIT FGQVAEIVDR GSTSCGTAGA LYALIAVVTG CACIYSCFYR GKMRAQYNIK GDDCTDCLKH
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR
Arabidopsis Description
PCR2PCR2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDU8]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.