Factsheet for VIT_17s0000g03960.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49030.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62851	Canola	cytosol, extracellular, plasma membrane	26.2	52.23
CDY48592	Canola	plastid	28.43	50.86
AT3G18460.1	Thale cress	cytosol, extracellular, nucleus, plastid	28.11	47.83
CDY70500	Canola	cytosol	23.64	47.74
VIT_01s0011g03250.t01	Wine grape	cytosol	9.58	47.62
CDX92237	Canola	cytosol	25.88	46.82
Bra022322.1-P	Field mustard	cytosol	25.56	46.24
VIT_01s0011g03240.t01	Wine grape	extracellular, plastid	23.32	42.94
VIT_01s0011g05430.t01	Wine grape	plastid	24.6	42.78
CDY71552	Canola	plastid	27.48	42.57
AT1G49030.1	Thale cress	cytosol	30.35	42.41
AT3G18450.1	Thale cress	plastid	24.92	42.39
VIT_01s0011g05440.t01	Wine grape	plastid	24.28	42.22
CDY62854	Canola	cytosol	28.75	41.28
VIT_01s0011g03260.t01	Wine grape	plastid	27.16	40.67
VIT_01s0011g05470.t01	Wine grape	cytosol, plastid	25.88	40.3
Bra018774.1-P	Field mustard	cytosol	29.07	40.27
VIT_03s0063g00570.t01	Wine grape	cytosol	22.68	39.23
VIT_09s0002g04180.t01	Wine grape	cytosol	23.0	37.31
VIT_03s0063g00550.t01	Wine grape	cytosol	25.24	36.57
VIT_14s0006g03190.t01	Wine grape	cytosol, nucleus, plastid	36.74	36.51
VIT_01s0011g05450.t01	Wine grape	mitochondrion	24.92	34.98
VIT_03s0063g00560.t01	Wine grape	cytosol	23.64	34.1
Solyc03g119660.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	36.74	27.78
PGSC0003DMT400014354	Potato	cytosol, endoplasmic reticulum, nucleus	37.06	27.1
VIT_01s0011g05420.t01	Wine grape	cytosol	21.73	24.64
VIT_08s0040g00140.t01	Wine grape	extracellular, plasma membrane, plastid	10.86	24.11

Protein Annotations

EntrezGene:100250709	wikigene:100250709	MapMan:35.1	ProteinID:CBI15431	ProteinID:CBI15431.3	UniProt:D7SIX0
EMBL:FN594950	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100250709	wikigene:LOC100250709
PFAM:PF04749	InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF49	TIGRFAMs:TIGR01571	TMHMM:TMhelix
UniParc:UPI00015C9F1A	ArrayExpress:VIT_17s0000g03960	EnsemblPlantsGene:VIT_17s0000g03960	EnsemblPlants:VIT_17s0000g03960.t01	RefSeq:XP_002275631	RefSeq:XP_002275631.2
RefSeq:XP_010663577.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:-:3953004..3954418

Molecular Weight (calculated)

34545.7 Da

IEP (calculated)

4.625

GRAVY (calculated)

-0.582

Length

313 amino acids

Sequence
(BLAST)

001: MGRIQDQSQN QAEYELQPQE YQSESTQDLT LALDHDQLQQ EEYPQGPKHP SDAMESEPQA QQQFQQPPQY GNPQAQPNPA YMPQQTQQVS RPQNPQMNAM
101: NANQLAPFPP QSPQSLPLQQ SPQLHVFPHG PFQPQGFGTG MHGYQSPSPV PFPPASGEYQ GVLASPHKPP AAAEYWTSGL FDCMNDPTNA LVTVFFPCVT
201: FGQVAEIVDR GHTSCGTSGL LYGLIAFLIG LPCIMSCTYR TKMRSMYNLS ESPGPDWVVH CLCECCALCQ EYRELQARGF DPSIGWIGNV AKSQNIQMQH
301: GAMVPPGSQT MMG

Best Arabidopsis Sequence Match ( AT1G49030.1 )
(BLAST)

001: MGRPDQTPSP RMNNNFNPVF HAQSEQPVDE KRVLQAEQIY PNNGGVVNQP NQVPMRPGPP TYINQSATFN QPYGVSMAGP VHTQPSNWTS GLFDCMNDGE
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG

Arabidopsis Description

PCR6Protein PLANT CADMIUM RESISTANCE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.