Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G49030.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT1G49030.1 | CDY36943 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71552 | Canola | plastid | 86.24 | 93.07 |
| Bra018774.1-P | Field mustard | cytosol | 94.5 | 91.15 |
| CDY62851 | Canola | cytosol, extracellular, plasma membrane | 59.17 | 82.17 |
| CDY48592 | Canola | plastid | 62.84 | 78.29 |
| AT1G49030.1 | Thale cress | cytosol | 76.61 | 74.55 |
| CDX92238 | Canola | plasma membrane | 38.07 | 62.41 |
| CDY24480 | Canola | cytosol, extracellular, vacuole | 38.07 | 62.41 |
| CDX92237 | Canola | cytosol | 48.62 | 61.27 |
| CDY70500 | Canola | cytosol | 39.45 | 55.48 |
| CDY71864 | Canola | cytosol | 31.19 | 45.03 |
| CDY51779 | Canola | endoplasmic reticulum, extracellular | 20.18 | 44.44 |
| CDX81680 | Canola | cytosol | 30.73 | 44.37 |
| CDY33731 | Canola | cytosol | 30.73 | 44.37 |
| CDY33732 | Canola | cytosol | 30.73 | 44.37 |
| CDY45296 | Canola | cytosol | 30.28 | 43.71 |
| CDY29143 | Canola | cytosol | 26.61 | 38.67 |
| CDX81682 | Canola | cytosol, plastid, vacuole | 25.69 | 38.1 |
| CDX96001 | Canola | cytosol | 27.98 | 37.42 |
| CDX81681 | Canola | cytosol, plasma membrane, plastid | 27.52 | 37.04 |
| CDY33730 | Canola | cytosol | 24.31 | 35.1 |
| CDY39895 | Canola | cytosol | 24.31 | 32.52 |
| CDY07373 | Canola | cytosol | 23.85 | 32.3 |
| CDY04241 | Canola | cytosol | 23.85 | 32.3 |
| CDY38607 | Canola | plasma membrane | 22.94 | 31.06 |
| CDX96000 | Canola | plasma membrane | 22.94 | 31.06 |
| VIT_17s0000g03960.t01 | Wine grape | cytosol, nucleus, plastid | 41.28 | 28.75 |
| VIT_14s0006g03190.t01 | Wine grape | cytosol, nucleus, plastid | 41.28 | 28.57 |
| CDY38687 | Canola | cytosol | 24.77 | 26.47 |
| CDY57571 | Canola | cytosol | 22.48 | 25.52 |
| CDY53672 | Canola | cytosol | 21.56 | 25.13 |
| CDY57415 | Canola | cytosol | 22.02 | 24.87 |
| CDY06953 | Canola | cytosol | 21.56 | 24.35 |
| Solyc03g119660.1.1 | Tomato | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 44.95 | 23.67 |
| PGSC0003DMT400014354 | Potato | cytosol, endoplasmic reticulum, nucleus | 44.5 | 22.66 |
Protein Annotations
| EnsemblPlants:CDY62854 | EnsemblPlantsGene:GSBRNA2T00037680001 | GO:A0A078JAM5 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:PLAC_motif_containing | PANTHER:PTHR15907 | PANTHER:PTHR15907:SF49 | PFAM:PF04749 | ProteinID:CDY62854 | ProteinID:CDY62854.1 |
| TIGRFAMs:TIGR01571 | TMHMM:TMhelix | UniParc:UPI0004EEF571 | UniProt:A0A078JAM5 | MapMan:35.1 | : |
Description
BnaA06g03310DBnaA06g03310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAM5]
Coordinates
chrLK034206:+:31883..33089
Molecular Weight (calculated)
24356.3 Da
IEP (calculated)
5.670
GRAVY (calculated)
-0.404
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPDQTLSP GMHNNFNPMF HPQPAPEPTV YENQIVDTEQ KYIQTGVPNM PRPVPPTYIN PGRMGNQPYV PPQMARPVNQ PSNWTSGLFD CMNDGENAII
101: TCFFPFVTFG QIAEVTDEGA TSCGTGGMLY GLICCLFGIP CVYSCTFRAK IRSKFGLPDA PAPDWITHCF CEYCALCQEY RELKNRGLDP AIGWSGNVQR
201: QRQQQEMMAP PMGQRMMG
101: TCFFPFVTFG QIAEVTDEGA TSCGTGGMLY GLICCLFGIP CVYSCTFRAK IRSKFGLPDA PAPDWITHCF CEYCALCQEY RELKNRGLDP AIGWSGNVQR
201: QRQQQEMMAP PMGQRMMG
001: MGRPDQTPSP RMNNNFNPVF HAQSEQPVDE KRVLQAEQIY PNNGGVVNQP NQVPMRPGPP TYINQSATFN QPYGVSMAGP VHTQPSNWTS GLFDCMNDGE
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG
Arabidopsis Description
PCR6Protein PLANT CADMIUM RESISTANCE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9A5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.