CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92237	Canola	cytosol	87.74	78.61
AT3G18460.1	Thale cress	cytosol, extracellular, nucleus, plastid	74.84	63.04
AT3G18450.1	Thale cress	plastid	66.45	55.98
CDY62851	Canola	cytosol, extracellular, plasma membrane	48.39	47.77
CDY48592	Canola	plastid	52.9	46.86
CDX92238	Canola	plasma membrane	39.35	45.86
CDY24480	Canola	cytosol, extracellular, vacuole	39.35	45.86
CDY71552	Canola	plastid	54.19	41.58
CDY62854	Canola	cytosol	55.48	39.45
CDY45296	Canola	cytosol	38.06	39.07
CDY33731	Canola	cytosol	36.77	37.75
CDY33732	Canola	cytosol	36.77	37.75
CDX81680	Canola	cytosol	36.77	37.75
CDY71864	Canola	cytosol	36.13	37.09
CDY29143	Canola	cytosol	33.55	34.67
CDX81681	Canola	cytosol, plasma membrane, plastid	35.48	33.95
CDX96001	Canola	cytosol	35.48	33.74
CDX81682	Canola	cytosol, plastid, vacuole	31.61	33.33
CDY33730	Canola	cytosol	31.61	32.45
CDY51779	Canola	endoplasmic reticulum, extracellular	20.65	32.32
CDY39895	Canola	cytosol	33.55	31.9
CDY07373	Canola	cytosol	32.26	31.06
CDY04241	Canola	cytosol	32.26	31.06
CDY38607	Canola	plasma membrane	30.97	29.81
CDX96000	Canola	plasma membrane	30.97	29.81
CDY38687	Canola	cytosol	35.48	26.96
VIT_17s0000g03960.t01	Wine grape	cytosol, nucleus, plastid	47.74	23.64
CDY57571	Canola	cytosol	28.39	22.92
VIT_14s0006g03190.t01	Wine grape	cytosol, nucleus, plastid	46.45	22.86
CDY53672	Canola	cytosol	27.1	22.46
CDY57415	Canola	cytosol	27.74	22.28
CDY06953	Canola	cytosol	27.74	22.28
Solyc03g119660.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	49.68	18.6
PGSC0003DMT400014354	Potato	cytosol, endoplasmic reticulum, nucleus	49.03	17.76

Protein Annotations

EnsemblPlants:CDY70500	EnsemblPlantsGene:GSBRNA2T00003909001	InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF49	PFAM:PF04749
ProteinID:CDY70500	ProteinID:CDY70500.1	TIGRFAMs:TIGR01571	UniParc:UPI0004EAFC49	UniProt:A0A078JVM6	MapMan:35.1

Description

BnaCnng68650DBnaCnng68650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JVM6]

Coordinates

chrLK042307:-:1550..2196

Molecular Weight (calculated)

17219.6 Da

IEP (calculated)

6.078

GRAVY (calculated)

-0.150

Length

155 amino acids

Sequence
(BLAST)

001: MVRPGLDQPN QAHPQGYGNN KADVQPNIPT GIPVNNQTQN LWSSDLFDCM NDIENAVITC IVPCVTFGQI AEIVDEGATT CAIGGLLYGA IFITAFPYKY
101: SSLFRAKIRN KYGLPEAPAP DWLTHLFCEH CALCQEYREL KHRGFDPKIG KFSLL

Best Arabidopsis Sequence Match ( AT3G18460.1 )
(BLAST)

001: MGRPGSQPNE AQPPPVQVQP TVNRDNQVHS QNGAIGQANI QTGRPVNNQT QNLWSSDLFD CMNDSENAVI TCLAPCVTLG QIAEIVDEGA TPCATGGLLY
101: GMIFFIGVPF VYSCMFRAKM RNKYGLPDAP APDWITHLFC EHCALCQEYR ELKHRGFDPN IGWAGNVQAQ QPVMSPPTGQ RMMG

Arabidopsis Description

PCR4Protein PLANT CADMIUM RESISTANCE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS44]
SUBAcon: [plastid,extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.