Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G49030.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT1G49030.1 | CDY36943 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62851 | Canola | cytosol, extracellular, plasma membrane | 82.29 | 91.72 |
| CDY71552 | Canola | plastid | 74.86 | 64.85 |
| CDY62854 | Canola | cytosol | 78.29 | 62.84 |
| AT1G49030.1 | Thale cress | cytosol | 80.0 | 62.5 |
| CDY24480 | Canola | cytosol, extracellular, vacuole | 46.29 | 60.9 |
| CDX92238 | Canola | plasma membrane | 46.29 | 60.9 |
| CDX92237 | Canola | cytosol | 58.86 | 59.54 |
| CDY70500 | Canola | cytosol | 46.86 | 52.9 |
| CDY51779 | Canola | endoplasmic reticulum, extracellular | 25.71 | 45.45 |
| CDY71864 | Canola | cytosol | 37.71 | 43.71 |
| CDX81680 | Canola | cytosol | 37.14 | 43.05 |
| CDY33732 | Canola | cytosol | 37.14 | 43.05 |
| CDY33731 | Canola | cytosol | 37.14 | 43.05 |
| CDY45296 | Canola | cytosol | 36.57 | 42.38 |
| CDX96001 | Canola | cytosol | 37.71 | 40.49 |
| CDY29143 | Canola | cytosol | 31.43 | 36.67 |
| CDX81682 | Canola | cytosol, plastid, vacuole | 30.29 | 36.05 |
| CDX81681 | Canola | cytosol, plasma membrane, plastid | 33.14 | 35.8 |
| CDY33730 | Canola | cytosol | 30.86 | 35.76 |
| CDY07373 | Canola | cytosol | 29.71 | 32.3 |
| CDY04241 | Canola | cytosol | 29.71 | 32.3 |
| CDY39895 | Canola | cytosol | 28.57 | 30.67 |
| CDY38607 | Canola | plasma membrane | 27.43 | 29.81 |
| CDX96000 | Canola | plasma membrane | 27.43 | 29.81 |
| VIT_14s0006g03190.t01 | Wine grape | cytosol, nucleus, plastid | 52.57 | 29.21 |
| VIT_17s0000g03960.t01 | Wine grape | cytosol, nucleus, plastid | 50.86 | 28.43 |
| CDY38687 | Canola | cytosol | 29.14 | 25.0 |
| CDY06953 | Canola | cytosol | 27.43 | 24.87 |
| CDY57571 | Canola | cytosol | 26.86 | 24.48 |
| CDY57415 | Canola | cytosol | 26.86 | 24.35 |
| CDY53672 | Canola | cytosol | 25.71 | 24.06 |
| Solyc03g119660.1.1 | Tomato | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 53.71 | 22.71 |
| PGSC0003DMT400014354 | Potato | cytosol, endoplasmic reticulum, nucleus | 52.0 | 21.26 |
Protein Annotations
| EnsemblPlants:CDY48592 | EnsemblPlantsGene:GSBRNA2T00091333001 | GO:A0A078IF40 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:PLAC_motif_containing | PANTHER:PTHR15907 | PANTHER:PTHR15907:SF49 | PFAM:PF04749 | ProteinID:CDY48592 | ProteinID:CDY48592.1 |
| SEG:seg | TIGRFAMs:TIGR01571 | TMHMM:TMhelix | UniParc:UPI0004EEF131 | UniProt:A0A078IF40 | MapMan:35.1 |
Description
BnaCnng16510DBnaCnng16510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IF40]
Coordinates
chrLK032780:-:64980..66181
Molecular Weight (calculated)
19068.1 Da
IEP (calculated)
5.704
GRAVY (calculated)
-0.170
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPPQNPAV SHAQPAPGPI GIPSQLPMTG AASNQPSKWT SELFDCMNDG ENALITCFLP FITFGQIAEV IDEGASSCGT SGILYGVICC LLGIPCVYSC
101: TFRTKLRSKY GLPDAPAPDW ITHCFCEYCA LCQEYRELKN RGLDPAIGWN GNVQRQRMGQ QQEMMAPPMG QRMMG
101: TFRTKLRSKY GLPDAPAPDW ITHCFCEYCA LCQEYRELKN RGLDPAIGWN GNVQRQRMGQ QQEMMAPPMG QRMMG
001: MGRPDQTPSP RMNNNFNPVF HAQSEQPVDE KRVLQAEQIY PNNGGVVNQP NQVPMRPGPP TYINQSATFN QPYGVSMAGP VHTQPSNWTS GLFDCMNDGE
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG
Arabidopsis Description
PCR6Protein PLANT CADMIUM RESISTANCE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9A5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.