Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81682 | Canola | cytosol, plastid, vacuole | 63.58 | 70.07 |
| CDY33730 | Canola | cytosol | 61.11 | 65.56 |
| CDY33731 | Canola | cytosol | 60.49 | 64.9 |
| CDX81680 | Canola | cytosol | 59.88 | 64.24 |
| CDY71864 | Canola | cytosol | 59.88 | 64.24 |
| CDY33732 | Canola | cytosol | 59.88 | 64.24 |
| CDY45296 | Canola | cytosol | 59.26 | 63.58 |
| KRH47639 | Soybean | endoplasmic reticulum, extracellular | 33.95 | 59.78 |
| CDY51779 | Canola | endoplasmic reticulum, extracellular | 35.8 | 58.59 |
| KRH41677 | Soybean | extracellular | 49.38 | 45.71 |
| KRH60380 | Soybean | plastid | 51.85 | 45.16 |
| KRH60379 | Soybean | cytosol, plastid, vacuole | 51.85 | 43.98 |
| CDX96001 | Canola | cytosol | 42.59 | 42.33 |
| Solyc04g007900.2.1 | Tomato | nucleus | 47.53 | 41.4 |
| CDY24480 | Canola | cytosol, extracellular, vacuole | 33.95 | 41.35 |
| CDX92238 | Canola | plasma membrane | 33.95 | 41.35 |
| PGSC0003DMT400075916 | Potato | cytosol, endoplasmic reticulum, nucleus | 46.91 | 40.0 |
| CDY29143 | Canola | cytosol | 35.19 | 38.0 |
| VIT_01s0011g05450.t01 | Wine grape | mitochondrion | 51.85 | 37.67 |
| CDY62851 | Canola | cytosol, extracellular, plasma membrane | 35.19 | 36.31 |
| CDY70500 | Canola | cytosol | 33.95 | 35.48 |
| CDY48592 | Canola | plastid | 35.8 | 33.14 |
| CDY39895 | Canola | cytosol | 33.33 | 33.13 |
| CDX92237 | Canola | cytosol | 35.19 | 32.95 |
| CDY07373 | Canola | cytosol | 30.86 | 31.06 |
| CDY04241 | Canola | cytosol | 30.86 | 31.06 |
| CDY38607 | Canola | plasma membrane | 29.63 | 29.81 |
| CDX96000 | Canola | plasma membrane | 29.63 | 29.81 |
| CDY71552 | Canola | plastid | 37.04 | 29.7 |
| CDY62854 | Canola | cytosol | 37.04 | 27.52 |
| CDY38687 | Canola | cytosol | 33.95 | 26.96 |
| CDY57415 | Canola | cytosol | 29.63 | 24.87 |
| CDY57571 | Canola | cytosol | 29.01 | 24.48 |
| CDY06953 | Canola | cytosol | 29.01 | 24.35 |
| CDY53672 | Canola | cytosol | 27.78 | 24.06 |
| Os02t0286933-00 | Rice | cytosol, nucleus, plastid | 6.79 | 9.91 |
Protein Annotations
| EnsemblPlants:CDX81681 | EnsemblPlantsGene:GSBRNA2T00136603001 | GO:A0A078CWZ0 | InterPro:PLAC_motif_containing | PANTHER:PTHR15907 | PANTHER:PTHR15907:SF92 |
| PFAM:PF04749 | ProteinID:CDX81681 | ProteinID:CDX81681.1 | TIGRFAMs:TIGR01571 | TMHMM:TMhelix | UniParc:UPI0004EE18BD |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC08g39200D
Coordinates
chrLK031826:-:343705..348740
Molecular Weight (calculated)
18188.9 Da
IEP (calculated)
6.422
GRAVY (calculated)
0.037
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVEGKPQAD GEWSTGFCDC LSDCSNCCMT FWCPCVIFGQ IAEIVDQGSS SCGTTGALYM LLAWFTGCGC IYSCFYRTKM RKQYNLKGSE CGDCLKHFFC
101: ELCALTQAYR ELTNRGFDVA LGNRQPCLIF WSNVLKVLPS KKTMDFHVLI NTSTSFVCDQ RP
101: ELCALTQAYR ELTNRGFDVA LGNRQPCLIF WSNVLKVLPS KKTMDFHVLI NTSTSFVCDQ RP
001: MEAQHLHAKP HAEGEWSTGF CDCFSDCKNC CITFWCPCIT FGQVAEIVDR GSTSCGTAGA LYALIAVVTG CACIYSCFYR GKMRAQYNIK GDDCTDCLKH
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR
Arabidopsis Description
PCR2PCR2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDU8]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.