CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 2
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, extracellular, mitochondrion, plastid, vacuole
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47639	Soybean	endoplasmic reticulum, extracellular	42.47	85.87
KRH41677	Soybean	extracellular	75.81	80.57
KRH60379	Soybean	cytosol, plastid, vacuole	70.43	68.59
Bra026181.1-P	Field mustard	cytosol	51.08	62.91
Bra026796.1-P	Field mustard	cytosol	51.08	62.91
CDY45296	Canola	cytosol	51.08	62.91
CDY71864	Canola	cytosol	50.54	62.25
CDY33732	Canola	cytosol	50.54	62.25
AT1G14870.1	Thale cress	cytosol, mitochondrion, plasma membrane	50.0	61.18
AT5G35525.1	Thale cress	cytosol	49.46	60.53
CDY33731	Canola	cytosol	48.92	60.26
CDX81680	Canola	cytosol	48.39	59.6
CDY51779	Canola	endoplasmic reticulum, extracellular	31.72	59.6
Bra026794.1-P	Field mustard	cytosol, plastid, vacuole	46.77	59.18
CDX81682	Canola	cytosol, plastid, vacuole	46.24	58.5
AT1G14880.1	Thale cress	cytosol	47.31	58.28
CDY33730	Canola	cytosol	45.16	55.63
VIT_01s0011g05470.t01	Wine grape	cytosol, plastid	59.68	55.22
CDX81681	Canola	cytosol, plasma membrane, plastid	45.16	51.85
PGSC0003DMT400075916	Potato	cytosol, endoplasmic reticulum, nucleus	52.69	51.58
Solyc04g007900.2.1	Tomato	nucleus	51.08	51.08
KRH34433	Soybean	extracellular, nucleus, vacuole	33.87	46.32
KRH49878	Soybean	endoplasmic reticulum	37.1	43.4
KRH75408	Soybean	cytosol	34.41	42.95
KRH50266	Soybean	cytosol, peroxisome, plastid	44.09	42.49
KRH71150	Soybean	cytosol	42.47	40.51
Bra026795.1-P	Field mustard	extracellular	46.77	40.47
KRH71889	Soybean	cytosol	37.1	38.55
KRH39230	Soybean	extracellular	31.18	37.66
KRH09890	Soybean	cytosol	29.57	32.74
KRH77728	Soybean	extracellular	29.57	29.73
KRH27778	Soybean	extracellular, nucleus, plasma membrane	28.49	28.19
Os02t0286933-00	Rice	cytosol, nucleus, plastid	8.06	13.51

Protein Annotations

EntrezGene:100306298	MapMan:35.1	EMBL:ACUP02003364	EMBL:BT090340	UniProt:C6SYU2	EnsemblPlantsGene:GLYMA_05G236300
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlants:KRH60380	ProteinID:KRH60380	ProteinID:KRH60380.1
PFAM:PF04749	InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF96	TIGRFAMs:TIGR01571	TMHMM:TMhelix
UniParc:UPI0001B15A2A	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:41265538..41267276

Molecular Weight (calculated)

20281.2 Da

IEP (calculated)

7.346

GRAVY (calculated)

-0.198

Length

186 amino acids

Sequence
(BLAST)

001: MYQQQGSDPT KQSPATGFPV SYSNSTTYST NEASYAPVPP PQPKPLVNWS TGLCDCFSEC GNCCMTCWCP CVTFGRVAEI VDKGSTSCGA SGALYTLICC
101: VIGCGCLYSC FYRPKMRRQY GLKGNGCSDC LIHCFCEPCA LCQEYRELQH RGFDMIIGWH GNVEQRSRGV AMTATTAPSV ENGMSR

Best Arabidopsis Sequence Match ( AT1G14870.1 )
(BLAST)

001: MEAQHLHAKP HAEGEWSTGF CDCFSDCKNC CITFWCPCIT FGQVAEIVDR GSTSCGTAGA LYALIAVVTG CACIYSCFYR GKMRAQYNIK GDDCTDCLKH
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR

Arabidopsis Description

PCR2PCR2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDU8]
SUBAcon: [cytosol,plasma membrane,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.