CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plasma membrane 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 25724908

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g037950.1.1	Tomato	extracellular	42.21	43.62
PGSC0003DMT400056038	Potato	cytosol, extracellular, plastid	41.56	42.95
Zm00001d000070_P001	Maize	cytosol, extracellular, plastid	39.61	42.36
KRH75408	Soybean	cytosol	40.91	42.28
CDY29143	Canola	cytosol	40.91	42.0
AT1G58320.1	Thale cress	cytosol	39.61	41.22
KRH47639	Soybean	endoplasmic reticulum, extracellular	24.03	40.22
Os06t0520733-00	Rice	extracellular	29.22	39.82
KRH34433	Soybean	extracellular, nucleus, vacuole	34.42	38.97
KRH41677	Soybean	extracellular	40.91	36.0
KRH50266	Soybean	cytosol, peroxisome, plastid	42.86	34.2
CDY39895	Canola	cytosol	35.06	33.13
KRH71150	Soybean	cytosol	40.91	32.31
KRH60380	Soybean	plastid	37.66	31.18
KRH60379	Soybean	cytosol, plastid, vacuole	38.31	30.89
KRH71889	Soybean	cytosol	35.71	30.73
Os10t0112100-01	Rice	cytosol, plasma membrane, plastid	36.36	30.11
KRH09890	Soybean	cytosol	31.82	29.17
CDY38687	Canola	cytosol	38.31	28.92
KRH49878	Soybean	endoplasmic reticulum	29.22	28.3
Bra027875.1-P	Field mustard	cytosol	35.71	25.58
KRH77728	Soybean	extracellular	30.52	25.41
KRH27778	Soybean	extracellular, nucleus, plasma membrane	29.87	24.47

Protein Annotations

EMBL:ACUP02005925	EnsemblPlants:KRH39230	EnsemblPlantsGene:GLYMA_09G187000	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF94	PFAM:PF04749	ProteinID:KRH39230	ProteinID:KRH39230.1
TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI00023C8B70	UniProt:I1L4E6	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr9:+:41168331..41169635

Molecular Weight (calculated)

17057.5 Da

IEP (calculated)

7.542

GRAVY (calculated)

-0.121

Length

154 amino acids

Sequence
(BLAST)

001: MDTGEGKSAQ APNINAPPTG QWTTGLFDCF DDTGICCSTW LCPQCIFGPN AEIIDQGRTS SRSATYIFCG LSLVGWAFLY SFKFRSKLRA LYNLPEEPCG
101: DLCVHYCCLV FAISQERREL KNRGLDTSVG WKGNEFAMRK ANLVPPPVVP AMTR

Best Arabidopsis Sequence Match ( AT1G68630.1 )
(BLAST)

001: MYGNGPVFKA EGTSFRDQPY AEQLPQGLWT TGLCDCHEDA HICVQTAIMP CVSFAQNVEI VNRGTIPCMN AGLIHLALGF IGCSWLYAFP NRSRLREHFA
101: LPEEPCRDFL VHLFCTPCAI CQESRELKNR GADPSIGWLS NVEKWSREKV TPPIVVPGMI R

Arabidopsis Description

PCR12Protein PLANT CADMIUM RESISTANCE 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.