CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G58320.1	Thale cress	cytosol	80.0	81.08
CDY39895	Canola	cytosol	81.33	74.85
CDY38687	Canola	cytosol	78.67	57.84
CDY24480	Canola	cytosol, extracellular, vacuole	42.67	48.12
CDX92238	Canola	plasma membrane	42.0	47.37
Os06t0520733-00	Rice	extracellular	35.33	46.9
Solyc12g037950.1.1	Tomato	extracellular	44.0	44.3
Zm00001d000070_P001	Maize	cytosol, extracellular, plastid	42.0	43.75
PGSC0003DMT400056038	Potato	cytosol, extracellular, plastid	43.33	43.62
CDY38607	Canola	plasma membrane	44.0	40.99
CDX96000	Canola	plasma membrane	44.0	40.99
KRH39230	Soybean	extracellular	42.0	40.91
CDY33732	Canola	cytosol	40.67	40.4
CDY45296	Canola	cytosol	40.67	40.4
CDY07373	Canola	cytosol	42.67	39.75
CDY04241	Canola	cytosol	42.67	39.75
CDX81682	Canola	cytosol, plastid, vacuole	38.67	39.46
CDY71864	Canola	cytosol	39.33	39.07
CDX96001	Canola	cytosol	42.0	38.65
CDX81680	Canola	cytosol	38.67	38.41
CDY33731	Canola	cytosol	38.67	38.41
CDY51779	Canola	endoplasmic reticulum, extracellular	25.33	38.38
CDX81681	Canola	cytosol, plasma membrane, plastid	38.0	35.19
CDY33730	Canola	cytosol	35.33	35.1
CDY62851	Canola	cytosol, extracellular, plasma membrane	35.33	33.76
CDY70500	Canola	cytosol	34.67	33.55
Os10t0112100-01	Rice	cytosol, plasma membrane, plastid	39.33	31.72
CDY48592	Canola	plastid	36.67	31.43
CDX92237	Canola	cytosol	36.0	31.21
CDY71552	Canola	plastid	38.0	28.22
CDY62854	Canola	cytosol	38.67	26.61
CDY57571	Canola	cytosol	32.0	25.0
CDY53672	Canola	cytosol	30.67	24.6
CDY57415	Canola	cytosol	31.33	24.35
CDY06953	Canola	cytosol	31.33	24.35

Protein Annotations

EnsemblPlants:CDY29143	EnsemblPlantsGene:GSBRNA2T00041991001	GO:A0A078GX13	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF65	PFAM:PF04749	ProteinID:CDY29143	ProteinID:CDY29143.1
TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI0004EB92C2	UniProt:A0A078GX13	MapMan:35.1	:

Description

BnaC09g15400DBnaC09g15400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GX13]

Coordinates

chrLK032232:+:30273..33603

Molecular Weight (calculated)

16817.9 Da

IEP (calculated)

5.230

GRAVY (calculated)

-0.354

Length

150 amino acids

Sequence
(BLAST)

001: MSEHEGKDVK KVSEGQWTTG LYDCFSEDIP TCCFTWFCPC VAFGRIAEIL DKGETGQGLA GLMVVAMSHI GCGWYYASTY RAKLRRQYSL PEEPCSDGAI
101: HFFCCSCALS QEHRELKYRG LDPSLGWEGN IEKRTSDTTT PPFVTSSMDR

Best Arabidopsis Sequence Match ( AT1G58320.1 )
(BLAST)

001: MSEQEGKNEK KVTEGQWTTG LYDCLSEDIS TCCFTWVCPC VAFGRIAEIL DKGETSRGLA GLMVVAMSSI GCGWYYASKY RAKLRHQYAL PEAPCADGAI
101: HCFCCPCALT QEHRELKHRG LDPSLGWNIE NGGLNSNTPP FVASGMDR

Arabidopsis Description

PCR9Protein PLANT CADMIUM RESISTANCE 9 [Source:UniProtKB/Swiss-Prot;Acc:P0CW98]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.