CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G40935.9	Thale cress	cytosol	81.28	80.0
CDY57571	Canola	cytosol	79.14	77.08
Bra016960.1-P	Field mustard	cytosol	79.14	76.68
CDY06953	Canola	cytosol	78.61	76.17
CDY57415	Canola	cytosol	78.61	76.17
Solyc10g081410.1.1	Tomato	cytosol	60.43	60.11
PGSC0003DMT400072265	Potato	mitochondrion	60.43	60.11
GSMUA_Achr6P32110_001	Banana	extracellular, peroxisome, plasma membrane	58.82	58.51
KRH77728	Soybean	extracellular	57.75	58.38
VIT_08s0040g00140.t01	Wine grape	extracellular, plasma membrane, plastid	43.85	58.16
KRH27778	Soybean	extracellular, nucleus, plasma membrane	57.22	56.91
HORVU3Hr1G037940.1	Barley	cytosol	55.08	55.98
Zm00001d008282_P003	Maize	cytosol, extracellular, plasma membrane	54.55	55.43
TraesCS3D01G188300.1	Wheat	extracellular	54.55	55.43
TraesCS3A01G184200.2	Wheat	extracellular	54.55	55.43
EES02743	Sorghum	cytosol	54.01	55.19
TraesCS3B01G214000.1	Wheat	cytosol	54.01	54.89
Os01t0267400-01	Rice	cytosol, extracellular, plastid	41.18	52.38
GSMUA_Achr9P05180_001	Banana	endoplasmic reticulum, extracellular	40.64	49.67
CDY33731	Canola	cytosol	27.27	33.77
CDX81680	Canola	cytosol	27.27	33.77
CDY45296	Canola	cytosol	27.27	33.77
CDY51779	Canola	endoplasmic reticulum, extracellular	17.65	33.33
CDY33732	Canola	cytosol	26.74	33.11
CDY71864	Canola	cytosol	26.2	32.45
CDX92238	Canola	plasma membrane	22.46	31.58
CDY24480	Canola	cytosol, extracellular, vacuole	22.46	31.58
CDY29143	Canola	cytosol	24.6	30.67
CDY07373	Canola	cytosol	25.13	29.19
CDX81682	Canola	cytosol, plastid, vacuole	22.46	28.57
CDY04241	Canola	cytosol	24.6	28.57
CDX96001	Canola	cytosol	24.6	28.22
CDY33730	Canola	cytosol	22.46	27.81
CDX81681	Canola	cytosol, plasma membrane, plastid	24.06	27.78
CDY38607	Canola	plasma membrane	23.53	27.33
CDX96000	Canola	plasma membrane	23.53	27.33
CDY70500	Canola	cytosol	22.46	27.1
CDY39895	Canola	cytosol	23.53	26.99
CDY62851	Canola	cytosol, extracellular, plasma membrane	21.93	26.11
CDY48592	Canola	plastid	24.06	25.71
CDX92237	Canola	cytosol	22.99	24.86
CDY38687	Canola	cytosol	25.13	23.04
CDY71552	Canola	plastid	24.06	22.28
CDY62854	Canola	cytosol	25.13	21.56

Protein Annotations

EnsemblPlants:CDY53672	EnsemblPlantsGene:GSBRNA2T00011216001	InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PFAM:PF04749	ProteinID:CDY53672
ProteinID:CDY53672.1	TIGRFAMs:TIGR01571	UniParc:UPI0004EC42CE	UniProt:A0A078IUI8	MapMan:35.1	:

Description

BnaC04g52220DBnaC04g52220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUI8]

Coordinates

chrLK033226:+:17126..17844

Molecular Weight (calculated)

20407.1 Da

IEP (calculated)

4.769

GRAVY (calculated)

-0.098

Length

187 amino acids

Sequence
(BLAST)

001: MKEKGHYVPP SYTPLIKSED ADAEVSTTPN LEGADSGGTK GDPIQWSSGI CACFDDTQSC FIGLFCPCYV FAKNAEFLGS GTFAGPCLTH CISWSLVNTI
101: YCFATSGLLL SLPGCFVSCY TYGYRRSLRA KYNLEEAPCG DFATHFFCHL CAICQEYREI RERGSSSPDT KMAITDAPLP QTMESAN

Best Arabidopsis Sequence Match ( AT2G40935.8 )
(BLAST)

001: MKEKKGHYVP PSYIPLTQSD ADTEVETTTP NLEIAVSEST KDDPRQWSSG ICACFDDMQS CCVGLFCPCY IFGKNAELLG SGTFAGPCLT HCISWALVNT
101: ICCFATNGAL LGLPGCFVSC YACGYRKSLR AKYNLQEAPC GDFVTHFFCH LCAICQEYRE IREQSSGSYP LDMKMAITNA PLAQTMESAN

Arabidopsis Description

PCR10Protein PLANT CADMIUM RESISTANCE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8T8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.