Factsheet for Bra016960.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06953	Canola	cytosol	98.96	98.96
CDY57415	Canola	cytosol	97.93	97.93
CDY57571	Canola	cytosol	95.34	95.83
AT2G40935.9	Thale cress	cytosol	82.9	84.21
CDY53672	Canola	cytosol	76.68	79.14
Solyc10g081410.1.1	Tomato	cytosol	60.62	62.23
PGSC0003DMT400072265	Potato	mitochondrion	60.1	61.7
VIT_08s0040g00140.t01	Wine grape	extracellular, plasma membrane, plastid	44.56	60.99
GSMUA_Achr6P32110_001	Banana	extracellular, peroxisome, plasma membrane	58.55	60.11
KRH77728	Soybean	extracellular	57.51	60.0
KRH27778	Soybean	extracellular, nucleus, plasma membrane	56.99	58.51
Zm00001d008282_P003	Maize	cytosol, extracellular, plasma membrane	53.89	56.52
HORVU3Hr1G037940.1	Barley	cytosol	53.89	56.52
TraesCS3D01G188300.1	Wheat	extracellular	53.37	55.98
TraesCS3B01G214000.1	Wheat	cytosol	53.37	55.98
TraesCS3A01G184200.2	Wheat	extracellular	53.37	55.98
EES02743	Sorghum	cytosol	52.85	55.74
GSMUA_Achr9P05180_001	Banana	endoplasmic reticulum, extracellular	41.97	52.94
Os01t0267400-01	Rice	cytosol, extracellular, plastid	38.86	51.02
Bra026181.1-P	Field mustard	cytosol	26.42	33.77
Bra026796.1-P	Field mustard	cytosol	25.91	33.11
Bra004025.1-P	Field mustard	cytosol, extracellular, plasma membrane	19.17	32.74
Bra004325.1-P	Field mustard	cytosol	26.42	31.29
Bra026794.1-P	Field mustard	cytosol, plastid, vacuole	22.28	29.25
Bra004328.1-P	Field mustard	plasma membrane	22.8	27.33
Bra022323.1-P	Field mustard	cytosol, extracellular, plasma membrane	22.8	27.33
Bra022322.1-P	Field mustard	cytosol	22.8	25.43
Bra018953.1-P	Field mustard	plastid	23.32	23.94
Bra027875.1-P	Field mustard	cytosol	24.87	22.33
Bra026795.1-P	Field mustard	extracellular	24.35	21.86
Bra018774.1-P	Field mustard	cytosol	23.83	20.35

Protein Annotations

EnsemblPlants:Bra016960.1	EnsemblPlants:Bra016960.1-P	EnsemblPlantsGene:Bra016960	InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PFAM:PF04749
SEG:seg	TIGRFAMs:TIGR01571	UniParc:UPI00025452E7	UniProt:M4DKD1	MapMan:35.1	:

Description

AT2G40935 (E=2e-089) | unknown protein

Coordinates

chrA04:+:17392478..17393386

Molecular Weight (calculated)

21174.2 Da

IEP (calculated)

4.834

GRAVY (calculated)

-0.110

Length

193 amino acids

Sequence
(BLAST)

001: MKEKGDYVPP RYIPLRESEE ADATEEQATT TPTSLEVAVS GETRDGPKQW SSGICACFDD IQSCFIGLFC PCYIFGKNAE LLGSGKFAGP CLTHCISWAL
101: VNTICCFATN GVLLGLPGCF VSCYACGYRR SLRTKYNLQE APCGDFVTHF FCHLCAICQE YREIRERSSG SNPPDMKMAV TDAPIAQTME PAN

Best Arabidopsis Sequence Match ( AT2G40935.8 )
(BLAST)

001: MKEKKGHYVP PSYIPLTQSD ADTEVETTTP NLEIAVSEST KDDPRQWSSG ICACFDDMQS CCVGLFCPCY IFGKNAELLG SGTFAGPCLT HCISWALVNT
101: ICCFATNGAL LGLPGCFVSC YACGYRKSLR AKYNLQEAPC GDFVTHFFCH LCAICQEYRE IREQSSGSYP LDMKMAITNA PLAQTMESAN

Arabidopsis Description

PCR10Protein PLANT CADMIUM RESISTANCE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8T8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.