Factsheet for Bra018774.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018126.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49030.1	Bra018126.1-P	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71552	Canola	plastid	87.17	97.52
CDY62854	Canola	cytosol	91.15	94.5
AT1G49030.1	Thale cress	cytosol	76.11	76.79
Bra022322.1-P	Field mustard	cytosol	46.9	61.27
Bra022323.1-P	Field mustard	cytosol, extracellular, plasma membrane	33.63	47.2
Bra026796.1-P	Field mustard	cytosol	30.09	45.03
Bra026181.1-P	Field mustard	cytosol	29.2	43.71
Bra026794.1-P	Field mustard	cytosol, plastid, vacuole	25.66	39.46
Bra018953.1-P	Field mustard	plastid	30.97	37.23
Bra004325.1-P	Field mustard	cytosol	26.55	36.81
Bra004025.1-P	Field mustard	cytosol, extracellular, plasma membrane	17.7	35.4
Bra004328.1-P	Field mustard	plasma membrane	22.12	31.06
VIT_14s0006g03190.t01	Wine grape	cytosol, nucleus, plastid	41.15	29.52
Bra026795.1-P	Field mustard	extracellular	27.88	29.3
VIT_17s0000g03960.t01	Wine grape	cytosol, nucleus, plastid	40.27	29.07
Bra027875.1-P	Field mustard	cytosol	23.45	24.65
Solyc03g119660.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	44.25	24.15
Bra016960.1-P	Field mustard	cytosol	20.35	23.83
PGSC0003DMT400014354	Potato	cytosol, endoplasmic reticulum, nucleus	43.81	23.13

Protein Annotations

EnsemblPlants:Bra018774.1	EnsemblPlants:Bra018774.1-P	EnsemblPlantsGene:Bra018774	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF49	PFAM:PF04749	TIGRFAMs:TIGR01571	TMHMM:TMhelix
UniParc:UPI000253EC4C	UniProt:M4DQI1	MapMan:35.1	:	:	:

Description

AT1G49030 (E=8e-101) | unknown protein

Coordinates

chrA06:-:2061368..2062436

Molecular Weight (calculated)

25322.5 Da

IEP (calculated)

6.850

GRAVY (calculated)

-0.497

Length

226 amino acids

Sequence
(BLAST)

001: MGRPDQTPSP RMHNNFNPMF HPQPAPEPPV YEKQMVDTEQ KYPHNGGMLN QSSGVPNMPR PVQPTYINPG RMGNQPYVPP QMARPVNINQ NWTSGLFDCM
101: NDGENAIITC FFPFVTFGQI AEVTDEGATS CGTGGMLYGL ICCLFGIPCV YSCTFRAKIR SKFGLPDAPA PDWITHCFCE YCALCQEYRE LKNRGLDPAI
201: GWSGNVQRQR QQQEMMAPPM GQRMMG

Best Arabidopsis Sequence Match ( AT1G49030.1 )
(BLAST)

001: MGRPDQTPSP RMNNNFNPVF HAQSEQPVDE KRVLQAEQIY PNNGGVVNQP NQVPMRPGPP TYINQSATFN QPYGVSMAGP VHTQPSNWTS GLFDCMNDGE
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG

Arabidopsis Description

PCR6Protein PLANT CADMIUM RESISTANCE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.