Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62851 | Canola | cytosol, extracellular, plasma membrane | 58.48 | 83.44 |
| CDY48592 | Canola | plastid | 62.5 | 80.0 |
| CDY71552 | Canola | plastid | 71.43 | 79.21 |
| CDY62854 | Canola | cytosol | 74.55 | 76.61 |
| Bra018774.1-P | Field mustard | cytosol | 76.79 | 76.11 |
| AT3G18470.1 | Thale cress | cytosol, extracellular, vacuole | 37.5 | 63.16 |
| AT3G18460.1 | Thale cress | cytosol, extracellular, nucleus, plastid | 47.32 | 57.61 |
| AT3G18450.1 | Thale cress | plastid | 44.64 | 54.35 |
| AT5G35525.1 | Thale cress | cytosol | 28.57 | 42.11 |
| AT1G14870.1 | Thale cress | cytosol, mitochondrion, plasma membrane | 28.12 | 41.45 |
| AT1G58320.1 | Thale cress | cytosol | 26.34 | 39.86 |
| AT1G14880.1 | Thale cress | cytosol | 26.34 | 39.07 |
| AT1G68610.1 | Thale cress | cytosol | 27.23 | 38.12 |
| AT1G68630.1 | Thale cress | cytosol | 25.0 | 34.78 |
| AT1G52200.1 | Thale cress | plastid | 29.46 | 34.74 |
| VIT_17s0000g03960.t01 | Wine grape | cytosol, nucleus, plastid | 42.41 | 30.35 |
| VIT_14s0006g03190.t01 | Wine grape | cytosol, nucleus, plastid | 41.96 | 29.84 |
| Solyc03g119660.1.1 | Tomato | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 48.66 | 26.33 |
| PGSC0003DMT400014354 | Potato | cytosol, endoplasmic reticulum, nucleus | 47.77 | 25.0 |
| AT2G40935.9 | Thale cress | cytosol | 20.54 | 24.21 |
Protein Annotations
| MapMan:35.1 | EntrezGene:841326 | ProteinID:AAF69715.1 | ProteinID:AEE32383.1 | ArrayExpress:AT1G49030 | EnsemblPlantsGene:AT1G49030 |
| RefSeq:AT1G49030 | TAIR:AT1G49030 | RefSeq:AT1G49030-TAIR-G | EnsemblPlants:AT1G49030.1 | TAIR:AT1G49030.1 | EMBL:BT010928 |
| EMBL:BT011646 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_175332.1 | PFAM:PF04749 |
| InterPro:PLAC_motif_containing | PO:PO:0000293 | PO:PO:0009005 | PANTHER:PTHR15907 | PANTHER:PTHR15907:SF49 | UniProt:Q9M9A5 |
| TIGRFAMs:TIGR01571 | TMHMM:TMhelix | UniParc:UPI00000A92A4 | SEG:seg | : | : |
Description
PCR6Protein PLANT CADMIUM RESISTANCE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9A5]
Coordinates
chr1:+:18136666..18138080
Molecular Weight (calculated)
24876.8 Da
IEP (calculated)
5.669
GRAVY (calculated)
-0.374
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPDQTPSP RMNNNFNPVF HAQSEQPVDE KRVLQAEQIY PNNGGVVNQP NQVPMRPGPP TYINQSATFN QPYGVSMAGP VHTQPSNWTS GLFDCMNDGE
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.