Factsheet for Bra018953.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1
plastid 2
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G52200.1	Thale cress	plastid	78.72	77.89
PGSC0003DMT400006535	Potato	cytosol, extracellular, plastid	45.74	71.67
Solyc03g120600.2.1	Tomato	cytosol, peroxisome, plastid	56.38	61.63
KRH09890	Soybean	cytosol	54.79	61.31
Solyc06g066590.2.1	Tomato	cytosol, nucleus, peroxisome	54.79	56.28
PGSC0003DMT400042614	Potato	cytosol, mitochondrion, peroxisome	54.79	56.28
VIT_09s0002g04180.t01	Wine grape	cytosol	54.26	52.85
Bra026181.1-P	Field mustard	cytosol	30.85	38.41
Bra022322.1-P	Field mustard	cytosol	35.11	38.15
Bra026796.1-P	Field mustard	cytosol	30.32	37.75
Bra026794.1-P	Field mustard	cytosol, plastid, vacuole	27.66	35.37
Bra022323.1-P	Field mustard	cytosol, extracellular, plasma membrane	28.72	33.54
Bra004328.1-P	Field mustard	plasma membrane	27.66	32.3
Bra004025.1-P	Field mustard	cytosol, extracellular, plasma membrane	18.62	30.97
Bra018774.1-P	Field mustard	cytosol	37.23	30.97
Bra004325.1-P	Field mustard	cytosol	25.53	29.45
GSMUA_Achr5P22960_001	Banana	plastid	42.02	29.37
Bra027875.1-P	Field mustard	cytosol	28.19	24.65
Bra026795.1-P	Field mustard	extracellular	27.13	23.72
Bra016960.1-P	Field mustard	cytosol	23.94	23.32
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	45.74	20.57

Protein Annotations

EnsemblPlants:Bra018953.1	EnsemblPlants:Bra018953.1-P	EnsemblPlantsGene:Bra018953	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0016020	InterPro:PLAC_motif_containing	PANTHER:PTHR15907
PANTHER:PTHR15907:SF46	PFAM:PF04749	TIGRFAMs:TIGR01571	UniParc:UPI000253E90A	UniProt:M4DR10	MapMan:35.1

Description

AT1G52200 (E=2e-086) | unknown protein

Coordinates

chrA06:+:1025969..1027021

Molecular Weight (calculated)

20632.7 Da

IEP (calculated)

5.725

GRAVY (calculated)

-0.295

Length

188 amino acids

Sequence
(BLAST)

001: MGRVTTPQRG NPDGSSPVQQ TGIPVQQTGV PMSQFAPPGY HQANVNISVG TPWRSGLFDC QEDQTNAVMT AILPCVTFGQ IAEVLDEGEM TCPLGSFIYL
101: LMMPALCSQW VMGSKYREKM RRRFNLVEAP YSDCATHVLC SCCSLCQEYR ELKARNLDPS LGWNGILAQG QYGSEAPGNA PPNQYMTK

Best Arabidopsis Sequence Match ( AT1G52200.1 )
(BLAST)

001: MGRVTTPSEE DSNNGLPVQQ PGTPNQRTRV PVSQFAPPNY QQANVNLSVG RPWSTGLFDC QADQANAVLT TIVPCVTFGQ IAEVMDEGEM TCPLGTFMYL
101: LMMPALCSHW VMGSKYREKM RRKFNLVEAP YSDCASHVLC PCCSLCQEYR ELKIRNLDPS LGWNGILAQG QGQYEREAPS FAPTNQYMSK

Arabidopsis Description

PCR8Protein PLANT CADMIUM RESISTANCE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M815]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.