Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400042614 | Potato | cytosol, mitochondrion, peroxisome | 96.17 | 96.17 |
| Solyc03g120600.2.1 | Tomato | cytosol, peroxisome, plastid | 69.95 | 74.42 |
| KRH09890 | Soybean | cytosol | 59.56 | 64.88 |
| VIT_09s0002g04180.t01 | Wine grape | cytosol | 57.92 | 54.92 |
| Bra018953.1-P | Field mustard | plastid | 56.28 | 54.79 |
| AT1G52200.1 | Thale cress | plastid | 55.74 | 53.68 |
| Solyc12g013570.1.1 | Tomato | cytosol | 26.78 | 36.84 |
| Solyc01g005470.2.1 | Tomato | extracellular | 32.24 | 35.98 |
| Solyc12g037950.1.1 | Tomato | extracellular | 28.96 | 35.57 |
| Solyc02g090730.2.1 | Tomato | plastid | 30.6 | 34.36 |
| GSMUA_Achr5P22960_001 | Banana | plastid | 49.73 | 33.83 |
| Solyc05g009620.2.1 | Tomato | plastid | 18.03 | 33.67 |
| Solyc04g007900.2.1 | Tomato | nucleus | 31.15 | 30.65 |
| Solyc08g013910.2.1 | Tomato | cytosol | 27.32 | 26.88 |
| Solyc10g081410.1.1 | Tomato | cytosol | 26.78 | 26.06 |
| Solyc08g013920.2.1 | Tomato | cytosol, plasma membrane, plastid | 30.05 | 25.11 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 49.73 | 21.77 |
| Solyc03g119660.1.1 | Tomato | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 39.34 | 17.39 |
Protein Annotations
| EnsemblPlants:Solyc06g066590.2.1 | EnsemblPlantsGene:Solyc06g066590.2 | InterPro:PLAC_motif_containing | PANTHER:PTHR15907 | PANTHER:PTHR15907:SF46 | PFAM:PF04749 |
| TIGRFAMs:TIGR01571 | UniParc:UPI0002765DAD | UniProt:K4C7T4 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr6:-:41833779..41840728
Molecular Weight (calculated)
20327.3 Da
IEP (calculated)
5.096
GRAVY (calculated)
-0.237
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVEANNEG ETSQAESGTE PAASQPQQFQ GVQSVYQSPS HLTIGAPWST GLFDCHLDQT NAVMTAFLPC VTFGQIAEVL DAGQMTCPLG TFIYMLMMPA
101: VCSQWIMGSK YRTQLRQRYN LVEAPYSDMI SHMFCPCCSL CQEFRELRNR GLDPALGWNG IVAQRHYGNQ QVNQAPQVQS MSM
101: VCSQWIMGSK YRTQLRQRYN LVEAPYSDMI SHMFCPCCSL CQEFRELRNR GLDPALGWNG IVAQRHYGNQ QVNQAPQVQS MSM
001: MGRVTTPSEE DSNNGLPVQQ PGTPNQRTRV PVSQFAPPNY QQANVNLSVG RPWSTGLFDC QADQANAVLT TIVPCVTFGQ IAEVMDEGEM TCPLGTFMYL
101: LMMPALCSHW VMGSKYREKM RRKFNLVEAP YSDCASHVLC PCCSLCQEYR ELKIRNLDPS LGWNGILAQG QGQYEREAPS FAPTNQYMSK
101: LMMPALCSHW VMGSKYREKM RRKFNLVEAP YSDCASHVLC PCCSLCQEYR ELKIRNLDPS LGWNGILAQG QGQYEREAPS FAPTNQYMSK
Arabidopsis Description
PCR8Protein PLANT CADMIUM RESISTANCE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M815]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.