CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022322.1-P	Field mustard	cytosol	98.84	98.84
CDY70500	Canola	cytosol	78.61	87.74
AT3G18460.1	Thale cress	cytosol, extracellular, nucleus, plastid	76.3	71.74
AT3G18450.1	Thale cress	plastid	72.25	67.93
CDY62851	Canola	cytosol, extracellular, plasma membrane	55.49	61.15
CDY48592	Canola	plastid	59.54	58.86
CDY71552	Canola	plastid	60.69	51.98
CDX92238	Canola	plasma membrane	38.15	49.62
CDY24480	Canola	cytosol, extracellular, vacuole	38.15	49.62
CDY62854	Canola	cytosol	61.27	48.62
CDY45296	Canola	cytosol	38.73	44.37
CDY33731	Canola	cytosol	38.15	43.71
CDX81680	Canola	cytosol	38.15	43.71
CDY71864	Canola	cytosol	37.57	43.05
CDY33732	Canola	cytosol	37.57	43.05
CDY51779	Canola	endoplasmic reticulum, extracellular	23.7	41.41
CDX96001	Canola	cytosol	36.42	38.65
CDX81682	Canola	cytosol, plastid, vacuole	31.79	37.41
CDY29143	Canola	cytosol	31.21	36.0
CDY33730	Canola	cytosol	31.21	35.76
CDX81681	Canola	cytosol, plasma membrane, plastid	32.95	35.19
CDY07373	Canola	cytosol	30.64	32.92
CDY04241	Canola	cytosol	30.64	32.92
CDY38607	Canola	plasma membrane	29.48	31.68
CDX96000	Canola	plasma membrane	29.48	31.68
CDY39895	Canola	cytosol	28.9	30.67
CDY38687	Canola	cytosol	31.21	26.47
VIT_17s0000g03960.t01	Wine grape	cytosol, nucleus, plastid	46.82	25.88
VIT_14s0006g03190.t01	Wine grape	cytosol, nucleus, plastid	46.82	25.71
CDY53672	Canola	cytosol	24.86	22.99
CDY57571	Canola	cytosol	25.43	22.92
CDY57415	Canola	cytosol	24.86	22.28
CDY06953	Canola	cytosol	24.86	22.28
Solyc03g119660.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	49.71	20.77
PGSC0003DMT400014354	Potato	cytosol, endoplasmic reticulum, nucleus	48.55	19.63

Protein Annotations

EnsemblPlants:CDX92237	EnsemblPlantsGene:GSBRNA2T00153951001	InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF49	PFAM:PF04749
ProteinID:CDX92237	ProteinID:CDX92237.1	TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI0004EE87A8	MapMan:35.1

Description

BnaA05g21700D

Coordinates

chrLK031871:-:993004..993944

Molecular Weight (calculated)

19136.9 Da

IEP (calculated)

5.135

GRAVY (calculated)

-0.291

Length

173 amino acids

Sequence
(BLAST)

001: MVRPGLDQPN QAHPQGDGNN KAHIQPNIPT GIPVDNQTQN RWNSDLFDCM NDSENAVITC IVPCVTFGQI AEIVDEGATT CAIGGVLYGA IFLTLFPSVY
101: SSLFRAKIRN KYGLPDAPAP DWLTHLFCEP CALCQEYREL KHRGFDPKIG WAMNVQAQQQ EMMAPPTGQR MMG

Best Arabidopsis Sequence Match ( AT3G18460.1 )
(BLAST)

001: MGRPGSQPNE AQPPPVQVQP TVNRDNQVHS QNGAIGQANI QTGRPVNNQT QNLWSSDLFD CMNDSENAVI TCLAPCVTLG QIAEIVDEGA TPCATGGLLY
101: GMIFFIGVPF VYSCMFRAKM RNKYGLPDAP APDWITHLFC EHCALCQEYR ELKHRGFDPN IGWAGNVQAQ QPVMSPPTGQ RMMG

Arabidopsis Description

PCR4Protein PLANT CADMIUM RESISTANCE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS44]
SUBAcon: [plastid,extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.