CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45296	Canola	cytosol	95.96	62.91
Bra026181.1-P	Field mustard	cytosol	95.96	62.91
CDY71864	Canola	cytosol	88.89	58.28
CDY33732	Canola	cytosol	88.89	58.28
CDY33731	Canola	cytosol	82.83	54.3
CDX81680	Canola	cytosol	81.82	53.64
AT1G14870.1	Thale cress	cytosol, mitochondrion, plasma membrane	80.81	52.63
KRH47639	Soybean	endoplasmic reticulum, extracellular	48.48	52.17
AT5G35525.1	Thale cress	cytosol	75.76	49.34
AT1G14880.1	Thale cress	cytosol	73.74	48.34
CDX81682	Canola	cytosol, plastid, vacuole	65.66	44.22
CDY33730	Canola	cytosol	58.59	38.41
CDX81681	Canola	cytosol, plasma membrane, plastid	58.59	35.8
KRH60380	Soybean	plastid	59.6	31.72
KRH41677	Soybean	extracellular	54.55	30.86
KRH60379	Soybean	cytosol, plastid, vacuole	57.58	29.84
Solyc04g007900.2.1	Tomato	nucleus	55.56	29.57
PGSC0003DMT400075916	Potato	cytosol, endoplasmic reticulum, nucleus	56.57	29.47
CDX96001	Canola	cytosol	48.48	29.45
CDY24480	Canola	cytosol, extracellular, vacuole	39.39	29.32
CDX92238	Canola	plasma membrane	39.39	29.32
CDY62851	Canola	cytosol, extracellular, plasma membrane	43.43	27.39
VIT_01s0011g05450.t01	Wine grape	mitochondrion	58.59	26.01
CDY48592	Canola	plastid	45.45	25.71
CDY29143	Canola	cytosol	38.38	25.33
CDX92237	Canola	cytosol	41.41	23.7
CDY71552	Canola	plastid	44.44	21.78
CDY04241	Canola	cytosol	35.35	21.74
CDY07373	Canola	cytosol	35.35	21.74
CDY70500	Canola	cytosol	32.32	20.65
CDX96000	Canola	plasma membrane	33.33	20.5
CDY38607	Canola	plasma membrane	33.33	20.5
CDY39895	Canola	cytosol	33.33	20.25
CDY62854	Canola	cytosol	44.44	20.18
CDY53672	Canola	cytosol	33.33	17.65
CDY57571	Canola	cytosol	33.33	17.19
CDY06953	Canola	cytosol	33.33	17.1
CDY57415	Canola	cytosol	33.33	17.1
CDY38687	Canola	cytosol	33.33	16.18
Os02t0286933-00	Rice	cytosol, nucleus, plastid	2.02	1.8

Protein Annotations

EnsemblPlants:CDY51779	EnsemblPlantsGene:GSBRNA2T00004215001	GO:A0A078IQS8	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF92	PFAM:PF04749	ProteinID:CDY51779	ProteinID:CDY51779.1
TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI0004EDC60C	UniProt:A0A078IQS8	MapMan:35.1	:

Description

BnaC05g49620DBnaC05g49620D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078IQS8]

Coordinates

chrLK033025:-:88289..88679

Molecular Weight (calculated)

10876.1 Da

IEP (calculated)

8.391

GRAVY (calculated)

-0.165

Length

99 amino acids

Sequence
(BLAST)

1: SACGTAGAIY TLINFFTGCG CLYSCFYRGK MRAQYNIGGN DCGDCLKHFF CELCALTQQY RELKNRGYDM KLGWAGNAQL QQNQGVAMGA PVFQGGMTR

Best Arabidopsis Sequence Match ( AT1G14870.1 )
(BLAST)

001: MEAQHLHAKP HAEGEWSTGF CDCFSDCKNC CITFWCPCIT FGQVAEIVDR GSTSCGTAGA LYALIAVVTG CACIYSCFYR GKMRAQYNIK GDDCTDCLKH
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR

Arabidopsis Description

PCR2PCR2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDU8]
SUBAcon: [mitochondrion,plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.