CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 4
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004328.1-P	Field mustard	plasma membrane	100.0	100.0
CDX96000	Canola	plasma membrane	100.0	100.0
CDY07373	Canola	cytosol	83.23	83.23
CDY04241	Canola	cytosol	82.61	82.61
AT1G68630.1	Thale cress	cytosol	81.99	81.99
VIT_01s0011g03240.t01	Wine grape	extracellular, plastid	50.93	48.24
KRH75408	Soybean	cytosol	42.86	46.31
PGSC0003DMT400033759	Potato	cytosol	40.99	45.83
CDY29143	Canola	cytosol	40.99	44.0
Solyc12g013570.1.1	Tomato	cytosol	34.78	42.11
CDX92238	Canola	plasma membrane	31.68	38.35
Zm00001d000070_P001	Maize	cytosol, extracellular, plastid	34.16	38.19
CDY24480	Canola	cytosol, extracellular, vacuole	31.06	37.59
Os06t0520733-00	Rice	extracellular	26.09	37.17
CDY39895	Canola	cytosol	36.02	35.58
CDX81682	Canola	cytosol, plastid, vacuole	31.06	34.01
CDX96001	Canola	cytosol	34.16	33.74
CDY51779	Canola	endoplasmic reticulum, extracellular	20.5	33.33
CDY33732	Canola	cytosol	31.06	33.11
CDY45296	Canola	cytosol	31.06	33.11
Os10t0112100-01	Rice	cytosol, plasma membrane, plastid	37.27	32.26
CDX81680	Canola	cytosol	29.81	31.79
CDY71864	Canola	cytosol	29.81	31.79
CDY33731	Canola	cytosol	29.81	31.79
CDY70500	Canola	cytosol	29.81	30.97
CDY38687	Canola	cytosol	37.89	29.9
CDX81681	Canola	cytosol, plasma membrane, plastid	29.81	29.63
CDX92237	Canola	cytosol	31.68	29.48
CDY62851	Canola	cytosol, extracellular, plasma membrane	27.95	28.66
CDY33730	Canola	cytosol	26.71	28.48
CDY48592	Canola	plastid	29.81	27.43
CDY71552	Canola	plastid	30.43	24.26
CDY53672	Canola	cytosol	27.33	23.53
CDY62854	Canola	cytosol	31.06	22.94
CDY57571	Canola	cytosol	27.33	22.92
CDY57415	Canola	cytosol	27.33	22.8
CDY06953	Canola	cytosol	27.33	22.8

Protein Annotations

EnsemblPlants:CDY38607	EnsemblPlantsGene:GSBRNA2T00066294001	GO:A0A078E2E6	InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF65
PFAM:PF04749	ProteinID:CDY38607	ProteinID:CDY38607.1	TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI00025417B2
UniProt:A0A078E2E6	MapMan:35.1	:	:	:	:

Description

BnaC06g30300DBnaA07g27310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078E2E6]

Coordinates

chrLK032427:+:241731..242518

Molecular Weight (calculated)

18024.8 Da

IEP (calculated)

5.600

GRAVY (calculated)

-0.023

Length

161 amino acids

Sequence
(BLAST)

001: MYGDVPVFMA EGELFRDQPY AGELPQGLWT TGLCDCHEDG CICFQTAIVP CVSFAQNTEI VNRGTIPCIN AGLIHLALGF VGCCWLYAFP SRSRLREHFA
101: LPEKPCSDYW VHICCTPCAI CQESRELKNQ GADPSLGWVS NIEKWRREKI TPPIVVPGMN R

Best Arabidopsis Sequence Match ( AT1G68630.1 )
(BLAST)

001: MYGNGPVFKA EGTSFRDQPY AEQLPQGLWT TGLCDCHEDA HICVQTAIMP CVSFAQNVEI VNRGTIPCMN AGLIHLALGF IGCSWLYAFP NRSRLREHFA
101: LPEEPCRDFL VHLFCTPCAI CQESRELKNR GADPSIGWLS NVEKWSREKV TPPIVVPGMI R

Arabidopsis Description

PCR12Protein PLANT CADMIUM RESISTANCE 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.