Factsheet for PGSC0003DMT400056038

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
nucleus 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g037950.1.1	Tomato	extracellular	94.63	94.63
PGSC0003DMT400040788	Potato	cytosol	24.83	56.06
PGSC0003DMT400033759	Potato	cytosol	47.65	49.31
Zm00001d000070_P001	Maize	cytosol, extracellular, plastid	46.31	47.92
Os06t0520733-00	Rice	extracellular	34.9	46.02
AT1G58320.1	Thale cress	cytosol	44.3	44.59
CDY29143	Canola	cytosol	43.62	43.33
PGSC0003DMT400081921	Potato	cytosol, plasma membrane, plastid	46.31	42.07
KRH39230	Soybean	extracellular	42.95	41.56
PGSC0003DMT400075916	Potato	cytosol, endoplasmic reticulum, nucleus	46.98	36.84
CDY39895	Canola	cytosol	40.27	36.81
PGSC0003DMT400006535	Potato	cytosol, extracellular, plastid	29.53	36.67
Os10t0112100-01	Rice	cytosol, plasma membrane, plastid	40.94	32.8
CDY38687	Canola	cytosol	40.94	29.9
Bra027875.1-P	Field mustard	cytosol	42.28	29.3
PGSC0003DMT400042614	Potato	cytosol, mitochondrion, peroxisome	33.56	27.32
PGSC0003DMT400072265	Potato	mitochondrion	30.2	23.94
PGSC0003DMT400014354	Potato	cytosol, endoplasmic reticulum, nucleus	43.62	15.19
PGSC0003DMT400014896	Potato	nucleus, plastid	20.13	7.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400056038	EnsemblPlantsGene:PGSC0003DMG400021768	EntrezGene:102604017	InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PANTHER:PTHR15907:SF94
PFAM:PF04749	PGSC:PGSC0003DMG400021768	RefSeq:XP_006362369.1	SEG:seg	TIGRFAMs:TIGR01571	UniParc:UPI000294C902
UniProt:M1BYV6	MapMan:35.1	:	:	:	:

Description

Cell number regulator 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400021768]

Coordinates

chr12:+:41607940..41610526

Molecular Weight (calculated)

16169.4 Da

IEP (calculated)

6.788

GRAVY (calculated)

0.175

Length

149 amino acids

Sequence
(BLAST)

001: MSAKSAVIGT PAAGEWTTGL CGCFDDASNC CVTCCCPCVT FGRNVEIIDQ GTTSCVHAGV IYYCLAHVGW ACIYTCTYRT KLRAFFSLPE DPCGDCFVHC
101: CCLPCAVCQE YRELKNRGFD PTLGWMANAQ RWSQAGVTVP PHIAPGMNR

Best Arabidopsis Sequence Match ( AT1G68630.1 )
(BLAST)

001: MYGNGPVFKA EGTSFRDQPY AEQLPQGLWT TGLCDCHEDA HICVQTAIMP CVSFAQNVEI VNRGTIPCMN AGLIHLALGF IGCSWLYAFP NRSRLREHFA
101: LPEEPCRDFL VHLFCTPCAI CQESRELKNR GADPSIGWLS NVEKWSREKV TPPIVVPGMI R

Arabidopsis Description

PCR12Protein PLANT CADMIUM RESISTANCE 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.