Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- mitochondrion 1
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0011g05440.t01 | Wine grape | plastid | 52.17 | 80.0 |
| VIT_01s0011g05430.t01 | Wine grape | plastid | 51.45 | 78.89 |
| PGSC0003DMT400081921 | Potato | cytosol, plasma membrane, plastid | 35.87 | 60.37 |
| Solyc01g005470.2.1 | Tomato | extracellular | 34.78 | 58.54 |
| VIT_01s0011g05470.t01 | Wine grape | cytosol, plastid | 36.96 | 50.75 |
| VIT_01s0011g03240.t01 | Wine grape | extracellular, plastid | 27.54 | 44.71 |
| VIT_03s0063g00570.t01 | Wine grape | cytosol | 28.26 | 43.09 |
| VIT_01s0011g05450.t01 | Wine grape | mitochondrion | 34.06 | 42.15 |
| VIT_01s0011g03260.t01 | Wine grape | plastid | 30.43 | 40.19 |
| VIT_01s0011g03250.t01 | Wine grape | cytosol | 9.06 | 39.68 |
| VIT_03s0063g00550.t01 | Wine grape | cytosol | 29.71 | 37.96 |
| VIT_03s0063g00560.t01 | Wine grape | cytosol | 29.35 | 37.33 |
| VIT_09s0002g04180.t01 | Wine grape | cytosol | 19.57 | 27.98 |
| VIT_14s0006g03190.t01 | Wine grape | cytosol, nucleus, plastid | 27.17 | 23.81 |
| VIT_17s0000g03960.t01 | Wine grape | cytosol, nucleus, plastid | 24.64 | 21.73 |
| VIT_08s0040g00140.t01 | Wine grape | extracellular, plasma membrane, plastid | 10.87 | 21.28 |
Protein Annotations
| ArrayExpress:VIT_01s0011g05420 | EMBL:FN595752 | EnsemblPlants:VIT_01s0011g05420.t01 | EnsemblPlantsGene:VIT_01s0011g05420 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:PLAC_motif_containing | PANTHER:PTHR15907 | PANTHER:PTHR15907:SF92 | PFAM:PF04749 | ProteinID:CCB50802 |
| ProteinID:CCB50802.1 | SEG:seg | TIGRFAMs:TIGR01571 | TMHMM:TMhelix | UniParc:UPI0002108477 | UniProt:F6HFF3 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:5078507..5087724
Molecular Weight (calculated)
30541.2 Da
IEP (calculated)
7.070
GRAVY (calculated)
0.130
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MYQNDYQKFS ASPPPSAPPY TSIQPEVATG IPIISTGNLQ PGTEVPWSTC LCGCCSDVSN CCITCWCPCI TFGRIAEIVD KGAVSCCASC AVYAALACCA
101: CLFSCSYRTK LRKQFMLKGC SCGDCLVHCC CETCSLCQEY RELTHRGFDM SLGCLTMWCP CVTFGQIAEI VDRGNTSCFV AATLYAIVGL SKWGFCLSCF
201: YRTKMRKQFM LEKSPCDDCL VHWFCEPCAL CQEHRELKIR GFNPSIGWHA NMDNQQGVEV APKVEEGMNH IKKIIT
101: CLFSCSYRTK LRKQFMLKGC SCGDCLVHCC CETCSLCQEY RELTHRGFDM SLGCLTMWCP CVTFGQIAEI VDRGNTSCFV AATLYAIVGL SKWGFCLSCF
201: YRTKMRKQFM LEKSPCDDCL VHWFCEPCAL CQEHRELKIR GFNPSIGWHA NMDNQQGVEV APKVEEGMNH IKKIIT
001: MEAQHLHAKP HAEGEWSTGF CDCFSDCKNC CITFWCPCIT FGQVAEIVDR GSTSCGTAGA LYALIAVVTG CACIYSCFYR GKMRAQYNIK GDDCTDCLKH
101: FCCELCSLTQ QYRELKHRGY DMSLGNLFLR YTVFFLFHFV NN
101: FCCELCSLTQ QYRELKHRGY DMSLGNLFLR YTVFFLFHFV NN
Arabidopsis Description
PCR2PCR2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDU8]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.