Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000626.1-P | Field mustard | endoplasmic reticulum, extracellular | 91.0 | 82.99 |
| CDY34029 | Canola | cytosol | 90.35 | 82.4 |
| CDY68167 | Canola | cytosol | 82.32 | 73.35 |
| CDY16353 | Canola | cytosol | 80.71 | 71.92 |
| AT5G50700.1 | Thale cress | endoplasmic reticulum | 77.81 | 69.34 |
| AT5G50600.1 | Thale cress | endoplasmic reticulum | 77.81 | 69.34 |
| Solyc06g072670.2.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 59.81 | 53.3 |
| PGSC0003DMT400069254 | Potato | endoplasmic reticulum, extracellular, golgi | 59.16 | 52.72 |
| PGSC0003DMT400092688 | Potato | endoplasmic reticulum | 53.7 | 50.15 |
| Solyc03g097440.2.1 | Tomato | plastid | 55.95 | 49.43 |
| PGSC0003DMT400068094 | Potato | extracellular, plasma membrane, vacuole | 53.05 | 48.82 |
| VIT_17s0000g01050.t01 | Wine grape | golgi, vacuole | 49.84 | 48.14 |
| KRH59797 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 30.23 | 46.08 |
| CDX83014 | Canola | mitochondrion | 27.33 | 42.08 |
| TraesCS2B01G302200.1 | Wheat | plasma membrane, vacuole | 32.48 | 40.73 |
| CDY09733 | Canola | endoplasmic reticulum, golgi | 39.55 | 39.81 |
| CDX90560 | Canola | endoplasmic reticulum | 39.23 | 39.48 |
| CDX71662 | Canola | plasma membrane, vacuole | 37.94 | 39.46 |
| TraesCS2D01G284000.2 | Wheat | plasma membrane, vacuole | 44.05 | 39.03 |
| OQU81408 | Sorghum | extracellular, golgi, vacuole | 44.05 | 39.03 |
| CDY16351 | Canola | plasma membrane | 38.91 | 38.91 |
| HORVU2Hr1G070360.1 | Barley | plasma membrane | 45.66 | 38.69 |
| Zm00001d003938_P001 | Maize | golgi, vacuole | 43.41 | 38.57 |
| CDY21787 | Canola | endoplasmic reticulum, golgi | 37.3 | 37.42 |
| CDX91557 | Canola | plasma membrane | 33.76 | 36.71 |
| Os04t0390800-01 | Rice | plastid | 41.8 | 36.01 |
| CDY05818 | Canola | endoplasmic reticulum, extracellular | 18.01 | 35.9 |
| TraesCS2A01G285100.1 | Wheat | mitochondrion | 44.37 | 33.99 |
| CDX83013 | Canola | endoplasmic reticulum | 12.22 | 29.01 |
| CDX90742 | Canola | cytosol | 37.94 | 26.16 |
| CDY05081 | Canola | cytosol | 37.62 | 25.66 |
| CDX94277 | Canola | mitochondrion | 5.79 | 19.35 |
| CDY50699 | Canola | extracellular, golgi, vacuole | 19.29 | 18.29 |
| CDX75819 | Canola | cytosol, nucleus, plasma membrane | 3.86 | 18.18 |
| CDY43128 | Canola | extracellular, golgi, vacuole | 18.97 | 17.99 |
| CDY50698 | Canola | vacuole | 18.01 | 17.83 |
| CDY43129 | Canola | extracellular, golgi, vacuole | 19.29 | 14.71 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:5.9.4 | GO:A0A078D240 | EnsemblPlants:CDX83157 | ProteinID:CDX83157 | ProteinID:CDX83157.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | EnsemblPlantsGene:GSBRNA2T00138685001 |
| InterPro:NAD(P)-bd_dom_sf | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR43391 |
| PANTHER:PTHR43391:SF10 | InterPro:SDR_fam | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | UniParc:UPI0004EF1F9A | SEG:seg |
Description
BnaA03g23490D
Coordinates
chrLK031832:-:129096..130692
Molecular Weight (calculated)
35512.6 Da
IEP (calculated)
7.774
GRAVY (calculated)
-0.106
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MCFDRRWNIN LLTEERNIIH LRVTYYFFYH QRLAYEYASK GACLALTALR KNRLEEVAEI AREVGSPNVV TVHADVSKPD DCRRIVDETI SHFGRLDHLV
101: NNAGITKISM FENFEEITRT RSVMDTNFWG SVYTTRAALP YLRQSNGKIV VMSSSAAWLT APRMSFYNAS KAALLNFFET LRIELGGDVH ITIVTPGYTQ
201: FELAQGKYFS AEGELVVDQD VRDVQVGAFP VASVSACAKE IVNGVCRKQR YVTEPSWFKV TYLWKVFCPE LIEWGCRLLF MTTSEENALN KKILDNTGVR
301: GVLYPEPIRT L
101: NNAGITKISM FENFEEITRT RSVMDTNFWG SVYTTRAALP YLRQSNGKIV VMSSSAAWLT APRMSFYNAS KAALLNFFET LRIELGGDVH ITIVTPGYTQ
201: FELAQGKYFS AEGELVVDQD VRDVQVGAFP VASVSACAKE IVNGVCRKQR YVTEPSWFKV TYLWKVFCPE LIEWGCRLLF MTTSEENALN KKILDNTGVR
301: GVLYPEPIRT L
001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
Arabidopsis Description
HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.