Factsheet for Solyc03g097440.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068094	Potato	extracellular, plasma membrane, vacuole	91.19	94.97
Solyc06g072670.2.1	Tomato	endoplasmic reticulum, extracellular, golgi	70.45	71.06
Bra000626.1-P	Field mustard	endoplasmic reticulum, extracellular	58.24	60.12
CDY34029	Canola	cytosol	58.24	60.12
Bra022523.1-P	Field mustard	endoplasmic reticulum, extracellular	59.38	59.89
CDY16353	Canola	cytosol	59.38	59.89
CDY68167	Canola	cytosol	59.09	59.6
AT5G50700.1	Thale cress	endoplasmic reticulum	58.52	59.03
AT5G50600.1	Thale cress	endoplasmic reticulum	58.52	59.03
KRH59797	Soybean	endoplasmic reticulum, extracellular, plasma membrane	34.09	58.82
VIT_17s0000g01050.t01	Wine grape	golgi, vacuole	51.7	56.52
CDX83157	Canola	cytosol	49.43	55.95
TraesCS2B01G302200.1	Wheat	plasma membrane, vacuole	36.08	51.21
Solyc07g052270.2.1	Tomato	endoplasmic reticulum, vacuole	50.28	50.14
OQU81408	Sorghum	extracellular, golgi, vacuole	48.01	48.15
Zm00001d003938_P001	Maize	golgi, vacuole	47.16	47.43
TraesCS2D01G284000.2	Wheat	plasma membrane, vacuole	45.45	45.58
HORVU2Hr1G070360.1	Barley	plasma membrane	46.31	44.41
Solyc06g064650.2.1	Tomato	endoplasmic reticulum	40.06	43.79
Os04t0390800-01	Rice	plastid	42.05	41.0
TraesCS2A01G285100.1	Wheat	mitochondrion	44.6	38.67
Solyc04g024590.2.1	Tomato	endoplasmic reticulum	26.14	28.93

Protein Annotations

Gene3D:3.40.50.720	MapMan:5.9.4	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	UniProt:K4BJG1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43391
PANTHER:PTHR43391:SF10	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	EnsemblPlantsGene:Solyc03g097440.2	EnsemblPlants:Solyc03g097440.2.1
TMHMM:TMhelix	UniParc:UPI0002768383	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:59763395..59766545

Molecular Weight (calculated)

39699.4 Da

IEP (calculated)

7.335

GRAVY (calculated)

0.170

Length

352 amino acids

Sequence
(BLAST)

001: MVLLDLIHKF LNLVAPPFTL FTLLIFLPPY QFIKYFLSIL GKFFSENVAG KVIVITGASS GIGEYLAYEY ARRGACLTIA ARREKSLREV AERALDLGAL
101: DVLVVPADVS KVEDCRRVVD KTMSHYGRLD HLVNNAGVTS VSLFEEIEDI TNMRSIMDIN FWGSVYMTRF AIPYLRYSEG RIVVLSSAAS WMPAPRMSLY
201: AASKAAMVLF FEALRIEFGR DIKITLVTPG FVESEITQGK FIDKTGKVDV NPQMRDVEVG LTPVMKVEDC AEAIVNGACR GERYITVPSW FRVTYLWKVF
301: CPDVVEWFLR LSYFSGWGAS PEDAPSKKIL DYTGVRKVLY PENIRELGPK TE

Best Arabidopsis Sequence Match ( AT5G50600.1 )
(BLAST)

001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD

Arabidopsis Description

HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.