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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 4
  • vacuole 5
  • plasma membrane 4
  • golgi 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi, vacuole
Any Predictor:mitochondrion, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:vacuole
Predotar:mitochondrion
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d003938_P001 Maize golgi, vacuole 90.88 91.14
TraesCS2B01G302200.1 Wheat plasma membrane, vacuole 57.55 81.45
TraesCS2D01G284000.2 Wheat plasma membrane, vacuole 78.63 78.63
HORVU2Hr1G070360.1 Barley plasma membrane 78.63 75.2
TraesCS2A01G285100.1 Wheat mitochondrion 78.63 67.98
Os04t0390800-01 Rice plastid 67.52 65.65
PGSC0003DMT400028017 Potato cytosol 13.11 54.12
PGSC0003DMT400069254 Potato endoplasmic reticulum, extracellular, golgi 48.43 48.71
Solyc06g072670.2.1 Tomato endoplasmic reticulum, extracellular, golgi 48.15 48.42
PGSC0003DMT400068094 Potato extracellular, plasma membrane, vacuole 46.44 48.22
Solyc03g097440.2.1 Tomato plastid 48.15 48.01
AT5G50600.1 Thale cress endoplasmic reticulum 47.29 47.56
AT5G50700.1 Thale cress endoplasmic reticulum 47.29 47.56
CDY68167 Canola cytosol 47.29 47.56
PGSC0003DMT400092688 Potato endoplasmic reticulum 45.01 47.45
CDX83013 Canola endoplasmic reticulum 17.66 47.33
PGSC0003DMT400074514 Potato endoplasmic reticulum, golgi 47.58 47.31
CDY16353 Canola cytosol 47.01 47.28
EER99787 Sorghum endoplasmic reticulum 46.72 47.13
Bra022523.1-P Field mustard endoplasmic reticulum, extracellular 46.72 46.99
Solyc07g052270.2.1 Tomato endoplasmic reticulum, vacuole 46.72 46.46
CDY34029 Canola cytosol 44.73 46.04
KRH59794 Soybean extracellular, plasma membrane 14.53 45.54
CDX91557 Canola plasma membrane 37.04 45.45
Bra000626.1-P Field mustard endoplasmic reticulum, extracellular 44.16 45.45
CDY16351 Canola plasma membrane 40.17 45.34
AT5G50770.1 Thale cress endoplasmic reticulum 43.87 45.03
Bra022525.1-P Field mustard endoplasmic reticulum, plasma membrane 39.89 45.02
VIT_01s0146g00070.t01 Wine grape cytosol 35.61 44.8
CDX83157 Canola cytosol 39.03 44.05
AT3G47360.1 Thale cress endoplasmic reticulum 38.75 44.01
CDY05818 Canola endoplasmic reticulum, extracellular 19.09 42.95
KRH59795 Soybean extracellular 39.03 42.41
VIT_01s0146g00090.t01 Wine grape golgi 39.89 42.3
CDX71662 Canola plasma membrane, vacuole 35.9 42.14
Bra041076.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 35.61 41.81
CDY09733 Canola endoplasmic reticulum, golgi 36.75 41.75
KRH59797 Soybean endoplasmic reticulum, extracellular, plasma membrane 24.22 41.67
CDX90560 Canola endoplasmic reticulum 36.47 41.42
KRH41112 Soybean endoplasmic reticulum, golgi 44.44 41.38
CDY21787 Canola endoplasmic reticulum, golgi 36.47 41.29
AT5G50590.1 Thale cress extracellular, plasma membrane 35.04 41.14
AT5G50690.1 Thale cress extracellular, plasma membrane 35.04 41.14
Bra012757.1-P Field mustard extracellular, golgi 36.18 41.1
Bra033794.1-P Field mustard endoplasmic reticulum, plasma membrane 32.76 40.78
EES08518 Sorghum golgi, vacuole 41.31 40.73
EES05127 Sorghum endoplasmic reticulum, golgi 39.6 38.5
VIT_16s0039g01600.t01 Wine grape extracellular, nucleus, peroxisome, plastid 12.82 38.46
CDX83014 Canola mitochondrion 21.37 37.13
AT3G47350.2 Thale cress endoplasmic reticulum 33.9 37.07
KXG38108 Sorghum plastid 41.88 36.84
PGSC0003DMT400028018 Potato plastid 18.23 36.78
KXG37163 Sorghum endoplasmic reticulum 37.32 34.38
CDX94277 Canola mitochondrion 8.55 32.26
KXG28278 Sorghum endoplasmic reticulum 22.51 23.87
Protein Annotations
Gene3D:3.40.50.720MapMan:5.9.4UniProt:A0A1Z5RCE5GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0016491GO:GO:0055114InterPro:NAD(P)-bd_dom_sfEnsemblPlants:OQU81408ProteinID:OQU81408
ProteinID:OQU81408.1PFAM:PF00106PRINTS:PR00080PRINTS:PR00081ScanProsite:PS00061PANTHER:PTHR43391
PANTHER:PTHR43391:SF28InterPro:SDR_famEnsemblPlantsGene:SORBI_3006G053400SUPFAM:SSF51735InterPro:Sc_DH/Rdtase_CSTMHMM:TMhelix
UniParc:UPI000B8B9ED0SEG:seg::::
Description
hypothetical protein
Coordinates
chr6:+:38735978..38754104
Molecular Weight (calculated)
38739.0 Da
IEP (calculated)
7.955
GRAVY (calculated)
0.054
Length
351 amino acids
Sequence
(BLAST)
001: MMVMGSSRLA GAALQVALTA LLPLILPAYY VYKVTTYLLG AVFPENVAGK VVLITGAASG IGEHLAYEYA KRGAYLALVA RREASLREVG DVALGLGSPG
101: VLVLPADVSK PQDCESFIDD TIRYYGRLDH LVNNASVWKV CKFEEIEDVS HFRALMDINF WGHVYPTRLA IPHLKRSHGR IVGVTSNSSY IFIGRNTFYN
201: ASKAAALNFY DTLRMELGGD IRITEVVPGV VESEITKGKM LTKEGEMKVD QDERDAILGP TPAEPVGDFA RTVVRDVCRG ARYVFEPRWY MGVYLLRACI
301: PEVLAWNSRL LTVDRVGAST TDTLGKWLLD LPGVRRVAQP PSLRSPEIKE Q
Best Arabidopsis Sequence Match ( AT5G50600.1 )
(BLAST)
001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
Arabidopsis Description
HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.