Factsheet for VIT_01s0146g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0146g00070.t01	Wine grape	cytosol	51.96	61.65
VIT_16s0039g01600.t01	Wine grape	extracellular, nucleus, peroxisome, plastid	19.94	56.41
TraesCS2B01G302200.1	Wheat	plasma membrane, vacuole	36.56	48.79
VIT_17s0000g01040.t01	Wine grape	endoplasmic reticulum	22.96	46.91
VIT_17s0000g01050.t01	Wine grape	golgi, vacuole	40.48	41.61
Zm00001d003938_P001	Maize	golgi, vacuole	43.2	40.86
VIT_17s0000g01030.t01	Wine grape	endoplasmic reticulum, extracellular	6.04	40.82
TraesCS2D01G284000.2	Wheat	plasma membrane, vacuole	42.6	40.17
OQU81408	Sorghum	extracellular, golgi, vacuole	42.3	39.89
HORVU2Hr1G070360.1	Barley	plasma membrane	42.3	38.15
Os04t0390800-01	Rice	plastid	40.48	37.12
VIT_18s0001g06750.t01	Wine grape	endoplasmic reticulum	37.46	35.03
TraesCS2A01G285100.1	Wheat	mitochondrion	42.6	34.73
VIT_04s0023g00860.t01	Wine grape	endoplasmic reticulum, vacuole	20.24	21.07

Protein Annotations

EntrezGene:100854734	Gene3D:3.40.50.720	MapMan:5.9.4	ProteinID:CCB60846	ProteinID:CCB60846.1	UniProt:F6I1M9
EMBL:FN596513	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43391	PANTHER:PTHR43391:SF10	InterPro:SDR_fam
SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI00015CD0AF	ArrayExpress:VIT_01s0146g00090	EnsemblPlantsGene:VIT_01s0146g00090
EnsemblPlants:VIT_01s0146g00090.t01	RefSeq:XP_010656935.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:21872667..21876241

Molecular Weight (calculated)

36215.4 Da

IEP (calculated)

8.953

GRAVY (calculated)

0.193

Length

331 amino acids

Sequence
(BLAST)

001: MELDHLLHKA INLVLTPLVF AIICLILPFL IIFRLVVSIS SRFSSENMAR KVVLITGASS GIGEHMAYEY AKMGACLALV ARRKEKLEAV AARARGLGSP
101: DVLALRADVS NVNDCKRSID DTINHFGKLN HLVNNAGIGS VCALEEITDI TNSGSLMDVN YWGSVYPTYF AIPHLRKTKG KIVVNSSTSA LVQPPSMSFY
201: TSSKAAVIGF FESLRGELDP EVTVSIVTLG FVESEMTEGK LVSGNGEVIV APNLIKAISP TGLPKMRAGL AAKVIVDAIC RGERYVTEPK WYRMLTLFKY
301: LCPEVIEWHF RQTKFGKVKE APSNHIPSKA D

Best Arabidopsis Sequence Match ( AT5G50600.1 )
(BLAST)

001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD

Arabidopsis Description

HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.