Factsheet for VIT_01s0146g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
peroxisome 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g01600.t01	Wine grape	extracellular, nucleus, peroxisome, plastid	32.97	78.63
VIT_01s0146g00090.t01	Wine grape	golgi	61.65	51.96
VIT_17s0000g01040.t01	Wine grape	endoplasmic reticulum	25.45	43.83
TraesCS2B01G302200.1	Wheat	plasma membrane, vacuole	38.71	43.55
VIT_17s0000g01030.t01	Wine grape	endoplasmic reticulum, extracellular	6.81	38.78
VIT_17s0000g01050.t01	Wine grape	golgi, vacuole	43.01	37.27
TraesCS2D01G284000.2	Wheat	plasma membrane, vacuole	45.52	36.18
Zm00001d003938_P001	Maize	golgi, vacuole	45.16	36.0
OQU81408	Sorghum	extracellular, golgi, vacuole	44.8	35.61
Os04t0390800-01	Rice	plastid	45.52	35.18
HORVU2Hr1G070360.1	Barley	plasma membrane	45.16	34.33
VIT_18s0001g06750.t01	Wine grape	endoplasmic reticulum	43.01	33.9
TraesCS2A01G285100.1	Wheat	mitochondrion	45.16	31.03
VIT_04s0023g00860.t01	Wine grape	endoplasmic reticulum, vacuole	23.3	20.44

Protein Annotations

EntrezGene:100245367	wikigene:100245367	Gene3D:3.40.50.720	MapMan:5.9.4	ProteinID:CBI38150	ProteinID:CBI38150.3
UniProt:D7U5Y1	EMBL:FN596513	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	EntrezGene:LOC100245367	wikigene:LOC100245367	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43391	PANTHER:PTHR43391:SF10	InterPro:SDR_fam
SMART:SM00822	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	TIGR:TC58936	UniParc:UPI0001BE4ED8	ArrayExpress:VIT_01s0146g00070
EnsemblPlantsGene:VIT_01s0146g00070	EnsemblPlants:VIT_01s0146g00070.t01	unigene:Vvi.246	RefSeq:XP_002266761	RefSeq:XP_002266761.1	:

Description

No Description!

Coordinates

chr1:+:21864327..21867427

Molecular Weight (calculated)

30861.4 Da

IEP (calculated)

7.006

GRAVY (calculated)

0.048

Length

279 amino acids

Sequence
(BLAST)

001: MAGKVVLITG ASSGIGEQMA YEYAKKGACL VIVARRKKKL EEVAAQAREL GSPDVVVVCG DVSNINECKQ FIDEAIHHFG RLDHLVNNAG VTGGYPFEEI
101: TDITKFALLM DVNFWGTVYP TYFAIPHLRK TKGKIFVNSS SCAFLQPPRL SFYSASKAAL IGFFEALRIE LAPSVTITIA TLGIIDSEMS RGKILSKDGE
201: LILSPENSKG VFEGFPVMNT EPATKSIVDS ICRGERYVTE PQWYGAIHLL KDLCPEMVEW YYSIMYFKKK SSLFAEKAD

Best Arabidopsis Sequence Match ( AT5G50600.1 )
(BLAST)

001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD

Arabidopsis Description

HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.