Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G302200.1 | Wheat | plasma membrane, vacuole | 48.75 | 70.97 |
| TraesCS2D01G284000.2 | Wheat | plasma membrane, vacuole | 67.59 | 69.52 |
| OQU81408 | Sorghum | extracellular, golgi, vacuole | 65.65 | 67.52 |
| Zm00001d003938_P001 | Maize | golgi, vacuole | 65.1 | 67.14 |
| HORVU2Hr1G070360.1 | Barley | plasma membrane | 67.04 | 65.94 |
| TraesCS2A01G285100.1 | Wheat | mitochondrion | 67.87 | 60.34 |
| PGSC0003DMT400028017 | Potato | cytosol | 12.47 | 52.94 |
| VIT_01s0146g00070.t01 | Wine grape | cytosol | 35.18 | 45.52 |
| Os04t0390700-01 | Rice | plastid | 45.98 | 45.11 |
| Os12t0464400-01 | Rice | plastid | 42.66 | 44.13 |
| CDY68167 | Canola | cytosol | 42.66 | 44.13 |
| CDY16353 | Canola | cytosol | 42.66 | 44.13 |
| Bra022523.1-P | Field mustard | endoplasmic reticulum, extracellular | 42.38 | 43.84 |
| AT5G50700.1 | Thale cress | endoplasmic reticulum | 42.11 | 43.55 |
| AT5G50600.1 | Thale cress | endoplasmic reticulum | 42.11 | 43.55 |
| PGSC0003DMT400069254 | Potato | endoplasmic reticulum, extracellular, golgi | 42.11 | 43.55 |
| PGSC0003DMT400092688 | Potato | endoplasmic reticulum | 40.17 | 43.54 |
| Solyc06g072670.2.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 41.83 | 43.27 |
| CDX71662 | Canola | plasma membrane, vacuole | 35.18 | 42.47 |
| CDY34029 | Canola | cytosol | 39.89 | 42.23 |
| Solyc03g097440.2.1 | Tomato | plastid | 41.0 | 42.05 |
| Bra000626.1-P | Field mustard | endoplasmic reticulum, extracellular | 39.61 | 41.94 |
| CDX83157 | Canola | cytosol | 36.01 | 41.8 |
| PGSC0003DMT400068094 | Potato | extracellular, plasma membrane, vacuole | 39.06 | 41.72 |
| AT5G50690.1 | Thale cress | extracellular, plasma membrane | 34.35 | 41.47 |
| Bra041076.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 34.35 | 41.47 |
| AT5G50590.1 | Thale cress | extracellular, plasma membrane | 34.35 | 41.47 |
| AT5G50770.1 | Thale cress | endoplasmic reticulum | 39.06 | 41.23 |
| Solyc07g052270.2.1 | Tomato | endoplasmic reticulum, vacuole | 40.17 | 41.08 |
| CDY05818 | Canola | endoplasmic reticulum, extracellular | 17.73 | 41.03 |
| AT3G47360.1 | Thale cress | endoplasmic reticulum | 34.9 | 40.78 |
| CDY16351 | Canola | plasma membrane | 34.9 | 40.51 |
| PGSC0003DMT400074514 | Potato | endoplasmic reticulum, golgi | 39.61 | 40.51 |
| VIT_01s0146g00090.t01 | Wine grape | golgi | 37.12 | 40.48 |
| PGSC0003DMT400028018 | Potato | plastid | 19.39 | 40.23 |
| Bra022525.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 34.63 | 40.19 |
| VIT_16s0039g01600.t01 | Wine grape | extracellular, nucleus, peroxisome, plastid | 13.02 | 40.17 |
| CDX91557 | Canola | plasma membrane | 31.58 | 39.86 |
| KRH41112 | Soybean | endoplasmic reticulum, golgi | 41.0 | 39.26 |
| KRH59795 | Soybean | extracellular | 34.9 | 39.01 |
| CDY21787 | Canola | endoplasmic reticulum, golgi | 33.24 | 38.71 |
| CDX83013 | Canola | endoplasmic reticulum | 13.85 | 38.17 |
| Os02t0511100-00 | Rice | endoplasmic reticulum, golgi | 37.67 | 37.47 |
| CDX83014 | Canola | mitochondrion | 20.5 | 36.63 |
| CDY09733 | Canola | endoplasmic reticulum, golgi | 31.3 | 36.57 |
| CDX90560 | Canola | endoplasmic reticulum | 31.02 | 36.25 |
| Bra033794.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 28.25 | 36.17 |
| Bra012757.1-P | Field mustard | extracellular, golgi | 30.75 | 35.92 |
| Os02t0511400-01 | Rice | endoplasmic reticulum, golgi | 38.78 | 35.44 |
| Os11t0499600-01 | Rice | endoplasmic reticulum, golgi | 34.63 | 35.31 |
| KRH59794 | Soybean | extracellular, plasma membrane | 10.8 | 34.82 |
| Os03t0842900-01 | Rice | plastid | 34.07 | 34.65 |
| AT3G47350.2 | Thale cress | endoplasmic reticulum | 30.47 | 34.27 |
| KRH59797 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 19.11 | 33.82 |
| CDX94277 | Canola | mitochondrion | 7.2 | 27.96 |
| Os11t0265400-01 | Rice | plasma membrane | 19.94 | 21.95 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:5.9.4 | ProteinID:BAF14557.2 | ProteinID:BAS88965.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | EnsemblPlantsGene:Os04g0390800 |
| EnsemblPlants:Os04t0390800-01 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR43391 |
| PANTHER:PTHR43391:SF28 | UniProt:Q0JDN0 | InterPro:SDR_fam | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | UniParc:UPI0001B65FCE |
| SEG:seg | : | : | : | : | : |
Description
NAD(P)-binding domain containing protein. (Os04t0390800-01)
Coordinates
chr4:+:19236654..19239026
Molecular Weight (calculated)
39288.8 Da
IEP (calculated)
9.757
GRAVY (calculated)
-0.279
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: ERPASHGSPG AARRSGGAGG ARRLAWRCSS RPTASTGSPP PSSAPSSPPP PTTTSPARVV LITGASSGIG EHLAYEYARR GAYLALVARR EESLREVGDA
101: ALAAGSPGVL VVAGDVSSPD DCRKFVDDTI RYFGRLDHLV NNASIWQVGK FEELTDVNHF RKLMDINFWG HVYPTRHAIP HLKKTRGRIV GVTSNSSYIF
201: MPRNTFYNAS KAAAANLYET LRMELAGDGI AITEVIPGVV ESEITKGKML TKEGDMRVDQ DERDAILGAA PVERAGEFAR AAVRGVCGGE RYVFEPRWYR
301: AAYTLRVCFP EALEWCARLL TVWRLGPATT DTVGRWLLLG VPGQRWLSQP ASLRSPEIKA R
101: ALAAGSPGVL VVAGDVSSPD DCRKFVDDTI RYFGRLDHLV NNASIWQVGK FEELTDVNHF RKLMDINFWG HVYPTRHAIP HLKKTRGRIV GVTSNSSYIF
201: MPRNTFYNAS KAAAANLYET LRMELAGDGI AITEVIPGVV ESEITKGKML TKEGDMRVDQ DERDAILGAA PVERAGEFAR AAVRGVCGGE RYVFEPRWYR
301: AAYTLRVCFP EALEWCARLL TVWRLGPATT DTVGRWLLLG VPGQRWLSQP ASLRSPEIKA R
001: MELINDFLNL TAPFFTFFGL CFFLPPFYFF KFLQSIFSTI FSENLYGKVV LITGASSGIG EQLAYEYACR GACLALTARR KNRLEEVAEI ARELGSPNVV
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
101: TVHADVSKPD DCRRIVDDTI THFGRLDHLV NNAGMTQISM FENIEDITRT KAVLDTNFWG SVYTTRAALP YLRQSNGKIV AMSSSAAWLT APRMSFYNAS
201: KAALLSFFET MRIELGGDVH ITIVTPGYIE SELTQGKYFS GEGELIVNQD MRDVQVGPFP VASASGCAKS IVNGVCRKQR YVTEPSWFKV TYLWKVLCPE
301: LIEWGCRLLY MTGTGMSEDT ALNKRIMDIP GVRSTLYPES IRTPEIKSD
Arabidopsis Description
HSD111-beta-hydroxysteroid dehydrogenase 1B [Source:UniProtKB/Swiss-Prot;Acc:P0DKC6]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.