CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90560	Canola	endoplasmic reticulum	99.68	99.68
CDX83013	Canola	endoplasmic reticulum	29.77	70.23
CDY21787	Canola	endoplasmic reticulum, golgi	67.96	67.74
CDX83014	Canola	mitochondrion	41.75	63.86
CDY05818	Canola	endoplasmic reticulum, extracellular	27.18	53.85
CDX71662	Canola	plasma membrane, vacuole	47.9	49.5
CDX91557	Canola	plasma membrane	42.72	46.15
CDY16351	Canola	plasma membrane	46.28	45.98
KRH59795	Soybean	extracellular	47.9	45.82
TraesCS2B01G302200.1	Wheat	plasma membrane, vacuole	35.28	43.95
CDY16353	Canola	cytosol	48.22	42.69
CDY34029	Canola	cytosol	46.93	42.52
CDY68167	Canola	cytosol	47.57	42.12
CDX83157	Canola	cytosol	39.81	39.55
Solyc07g052270.2.1	Tomato	endoplasmic reticulum, vacuole	44.98	39.38
Zm00001d003938_P001	Maize	golgi, vacuole	43.04	38.0
OQU81408	Sorghum	extracellular, golgi, vacuole	41.75	36.75
TraesCS2D01G284000.2	Wheat	plasma membrane, vacuole	41.42	36.47
HORVU2Hr1G070360.1	Barley	plasma membrane	42.07	35.42
CDX94277	Canola	mitochondrion	10.03	33.33
Os04t0390800-01	Rice	plastid	36.57	31.3
TraesCS2A01G285100.1	Wheat	mitochondrion	40.45	30.79
CDX90742	Canola	cytosol	40.13	27.49
CDY05081	Canola	cytosol	40.13	27.19
CDY43128	Canola	extracellular, golgi, vacuole	27.83	26.22
CDY50699	Canola	extracellular, golgi, vacuole	27.51	25.91
CDY50698	Canola	vacuole	24.92	24.52
CDY43129	Canola	extracellular, golgi, vacuole	25.89	19.61
CDX75819	Canola	cytosol, nucleus, plasma membrane	2.27	10.61

Protein Annotations

Gene3D:3.40.50.720	MapMan:5.9.4	GO:A0A078FCG4	UniProt:A0A078FCG4	EnsemblPlants:CDY09733	ProteinID:CDY09733
ProteinID:CDY09733.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00031413001	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43391	PANTHER:PTHR43391:SF10
InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI0004EEEE33	SEG:seg

Description

BnaC07g33280DBnaC07g33280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCG4]

Coordinates

chrLK031998:-:698475..700735

Molecular Weight (calculated)

34704.7 Da

IEP (calculated)

8.735

GRAVY (calculated)

0.317

Length

309 amino acids

Sequence
(BLAST)

001: MDMLHIILNI LLPPLTIIFL FLFYPIYLFI KLLNCVRKHL CVENVAGKVV LITGASSGIG EHVAYEYAKK GADLALVARR EDRLQIVADT SRKLGSRDVI
101: IIPGDVTKIN DCMKFISETI SHFGKVDHLI NNAGVSQTVL FENFSQIQDA NPIMDTNFWG STYITYYAIP HLRKSKGKIV VIASAAAKIA IPVATIYSAS
201: KAALLGFYEA LRIELNPDIK VTIVFPGLIS TDMTTPEIIK RHGSDFMVSE PVSRCAKAIF QGVCRGEEYV ETPSWIKWFF LVKSVCPEVI NSIFNYSFLH
301: FIKPYFKRE

Best Arabidopsis Sequence Match ( AT3G47350.1 )
(BLAST)

001: MDMLHTILNF LLPPLTISFL VLFYPFYLFT KLMSCLKHLH FENVTGKVVL ITGASSGIGE HVAYEYAKKG AKLALVARRK DRLEIVAETS RQLGSGDVII
101: IPGDVSNVED CKKFIDETIH HFGKLDHLIN NAGVPQTVIF EDFTQIQDAN SIMDINFWGS TYITYFAIPH LRKSKGKIVV ISSATAIIPL QAASVYSASK
201: AALVKFFETL RVEISPDIKI TIALPGFIST DMTTPQFKEM YGSDFILSES VSRCAKAIFR GIGRGEAYVI EPSWIKWIFL IKNVCPEIVD YLLDYIFVSY
301: LKPYFKRD

Arabidopsis Description

ATHSD2Hydroxysteroid dehydrogenase 2 [Source:UniProtKB/TrEMBL;Acc:F4JBH8]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.