CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 7
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

cytosol: 19562800
cytosol: 21803444

msms PMID: 21803444 doi

P Jolivet, C Boulard, A Bellamy, B Valot, S d'Andréa, M Zivy, N Nesi, T Chardot

INRA, AgroParisTech, Institut Jean-Pierre Bourgin, UMR 1318, F-78000 Versailles, France. Pascale.Jolivet@versailles.inra.fr

msms PMID: 19562800 doi

P Jolivet, C Boulard, A Bellamy, C Larré, M Barre, H Rogniaux, S d'Andréa, T Chardot, N Nesi

NRA, UMR 206, Chimie Biologique, Thiverval-Grignon, France. jolivet@grignon.inra.fr

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000697.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	96.49	98.43
CDX90742	Canola	cytosol	96.49	97.56
AT4G10020.1	Thale cress	endoplasmic reticulum	78.07	91.52
Solyc06g064650.2.1	Tomato	endoplasmic reticulum	51.75	73.29
VIT_18s0001g06750.t01	Wine grape	endoplasmic reticulum	53.73	69.21
KRH77685	Soybean	endoplasmic reticulum	51.75	66.48
KRH27806	Soybean	nucleus	50.44	62.5
GSMUA_Achr7P02980_001	Banana	endoplasmic reticulum, golgi	47.37	62.43
GSMUA_AchrUn_...	Banana	extracellular, golgi	48.68	62.01
Os03t0842900-01	Rice	plastid	45.18	58.03
KXG37163	Sorghum	endoplasmic reticulum	46.71	55.91
Zm00001d034801_P001	Maize	peroxisome	29.39	51.74
HORVU5Hr1G120110.2	Barley	endoplasmic reticulum, vacuole	42.11	50.93
TraesCS5D01G529200.1	Wheat	endoplasmic reticulum, vacuole	42.76	50.39
TraesCS4A01G343700.1	Wheat	endoplasmic reticulum, vacuole	42.98	50.39
CDX94277	Canola	mitochondrion	10.09	49.46
TraesCS5B01G530500.1	Wheat	endoplasmic reticulum	41.67	49.1
CDX83013	Canola	endoplasmic reticulum	11.62	40.46
CDY68167	Canola	cytosol	30.92	40.4
CDY34029	Canola	cytosol	30.04	40.18
CDY09733	Canola	endoplasmic reticulum, golgi	27.19	40.13
CDY16353	Canola	cytosol	30.7	40.11
CDX90560	Canola	endoplasmic reticulum	26.97	39.81
CDY21787	Canola	endoplasmic reticulum, golgi	26.97	39.68
CDY16351	Canola	plasma membrane	26.32	38.59
CDX91557	Canola	plasma membrane	24.12	38.46
CDX71662	Canola	plasma membrane, vacuole	25.0	38.13
CDX83157	Canola	cytosol	25.66	37.62
CDY05818	Canola	endoplasmic reticulum, extracellular	12.72	37.18
CDX83014	Canola	mitochondrion	14.69	33.17
CDY50699	Canola	extracellular, golgi, vacuole	15.57	21.65
CDY43128	Canola	extracellular, golgi, vacuole	15.57	21.65
CDY50698	Canola	vacuole	14.69	21.34
CDY43129	Canola	extracellular, golgi, vacuole	16.01	17.89
CDX75819	Canola	cytosol, nucleus, plasma membrane	2.41	16.67

Protein Annotations

Gene3D:3.40.50.720	MapMan:5.9.4	GO:A0A078EV20	EnsemblPlants:CDY05081	ProteinID:CDY05081	ProteinID:CDY05081.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00119844001	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
PRINTS:PR01217	ScanProsite:PS00061	PANTHER:PTHR43391	PANTHER:PTHR43391:SF14	InterPro:SDR_fam	SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI0004EDC820	SEG:seg	:	:

Description

BnaC03g28790D

Coordinates

chrLK031959:+:525639..527976

Molecular Weight (calculated)

51179.7 Da

IEP (calculated)

7.229

GRAVY (calculated)

-0.334

Length

456 amino acids

Sequence
(BLAST)

001: MVDLLNSVMN LVAPPATMVV MAFSWPLLCF ITFSERLYNS YFVTEDMEDK VVVITGASSA IGEQIAYEYA KRGANLVLVA RREQRLRVVS NNARQIGANH
101: VIIIAADVVK EDDCRRFITQ AVNYYGRVDH LVNSASLGHT FYFDEVSDTT VFPHLLDINF WGNVYPTYVA LPHLQKTNGR IVVNASVENW LPLPRMSLYS
201: AAKAALVNFY ETLRFELNGD VGITIATHGW IGSEMSRGKF MLEEGAEMQW KEEREVPANG GPLEEFAKMI VAGACRGDAY VKFPNWYDVF LLYRVFTPNV
301: LRWTFKLLLS SEGSRQSSLV GVGQGLPPEE SSSQMKLMLE GGSPRVTASP PRYTPSPSPP HHTASPPRYT PSPSPPHHTS SPQRYTPSPS PPHYTSSRHR
401: YTPSPSPPHY TESPPLYTES PPHYTTSPNW YTESPPRYTP SPSPPRFSRF NIQELP

Best Arabidopsis Sequence Match ( AT4G10020.1 )
(BLAST)

001: MVDLLNSVMN LVAPPATMVV MAFAWPLLSF ISFSERAYNS YFATENMEDK VVVITGASSA IGEQIAYEYA KRGANLVLVA RREQRLRVVS NKAKQIGANH
101: VIIIAADVIK EDDCRRFITQ AVNYYGRVDH LVNTASLGHT FYFEEVSDTT VFPHLLDINF WGNVYPTYVA LPYLHQTNGR IVVNASVENW LPLPRMSLYS
201: AAKAALVNFY ETLRFELNGD VGITIATHGW IGSEMSGGKF MLEEGAEMQW KEEREVPANG GPLEEFAKMI VAGACRGDAY VKFPNWYDVF LLYRVFTPNV
301: LRWTFKLLLS TEGTRRSSLV GVGSGMPVDE SSSQMKLMLE GGPPRVPASP PRYTASPPHY TASPPRYPAS PPRYPASPPR FSQFNIQEL

Arabidopsis Description

HSD511-beta-hydroxysteroid dehydrogenase-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0G0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.