CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50699	Canola	extracellular, golgi, vacuole	78.79	15.85
CDY43128	Canola	extracellular, golgi, vacuole	78.79	15.85
CDY50698	Canola	vacuole	72.73	15.29
Solyc04g024590.2.1	Tomato	endoplasmic reticulum	68.18	14.15
VIT_04s0023g00860.t01	Wine grape	endoplasmic reticulum, vacuole	66.67	13.84
KRH00954	Soybean	endoplasmic reticulum	66.67	13.79
KRH40271	Soybean	vacuole	65.15	13.69
TraesCS4D01G081900.1	Wheat	vacuole	66.67	13.46
Os11t0265400-01	Rice	plasma membrane	66.67	13.41
KXG28278	Sorghum	endoplasmic reticulum	66.67	13.29
TraesCS4B01G084000.1	Wheat	vacuole	65.15	13.15
TraesCS4A01G232000.1	Wheat	vacuole	63.64	12.84
Zm00001d004616_P008	Maize	endoplasmic reticulum, golgi	65.15	12.04
GSMUA_Achr6P21340_001	Banana	endoplasmic reticulum, vacuole	65.15	11.94
CDY43129	Canola	extracellular, golgi, vacuole	72.73	11.76
HORVU4Hr1G014360.2	Barley	mitochondrion	45.45	7.71
CDX83014	Canola	mitochondrion	12.12	3.96
CDX83157	Canola	cytosol	18.18	3.86
CDY34029	Canola	cytosol	18.18	3.52
CDY16353	Canola	cytosol	18.18	3.44
CDX71662	Canola	plasma membrane, vacuole	15.15	3.34
CDY68167	Canola	cytosol	16.67	3.15
CDY21787	Canola	endoplasmic reticulum, golgi	13.64	2.9
CDX90742	Canola	cytosol	16.67	2.44
CDY05081	Canola	cytosol	16.67	2.41
CDX90560	Canola	endoplasmic reticulum	10.61	2.27
CDY09733	Canola	endoplasmic reticulum, golgi	10.61	2.27
CDY16351	Canola	plasma membrane	10.61	2.25
CDX91557	Canola	plasma membrane	7.58	1.75
AT3G03350.2	Thale cress	vacuole	9.09	1.6
CDX94277	Canola	mitochondrion	1.52	1.08
PGSC0003DMT400066088	Potato	endoplasmic reticulum, extracellular	3.03	1.06
CDY05818	Canola	endoplasmic reticulum, extracellular	0.0	0.0
CDX83013	Canola	endoplasmic reticulum	0.0	0.0

Protein Annotations

EnsemblPlants:CDX75819	EnsemblPlantsGene:GSBRNA2T00123777001	GO:A0A078CIB7	PANTHER:PTHR45274	ProteinID:CDX75819	ProteinID:CDX75819.1
TMHMM:TMhelix	UniParc:UPI0004EE2AFC	MapMan:35.2	:	:	:

Description

BnaC03g39020D

Coordinates

chrLK031805:+:915327..916248

Molecular Weight (calculated)

7825.7 Da

IEP (calculated)

8.214

GRAVY (calculated)

0.344

Length

66 amino acids

Sequence
(BLAST)

1: MRKRVSSERC AELTIIAASH NLKEAWISYQ PVLLVMYLLQ YMPFLGFWLM DKIRFSVECF SSEISF

Best Arabidopsis Sequence Match ( AT3G03330.1 )
(BLAST)

001: MLTLLFFSLG ALLLIVLLFK FAFADGDFTL ISKKHVKREA IQGKVVWITG ASRGIGEILA KQFASLDAKL ILSARNKAEL DRVKSELKGK FAPEDVKVLP
101: LDLASGEESL KHVVEQAVSL FPGAGVDYLV HNAAFERPKS KASDASEETL KTTFDVNVFG TISLTKLVAP HMLKQGGGHF VVISSAAGKV PSPGQAIYSA
201: SKHALHGYFH SLRSEFCQKG IKVTVVCPGP IETWNGTGTS TSEDSKSPEK RVSSERCAEL TIIAASHNLK EAWISYQPVL LVMYLVQYMP SLGFWLMDKV
301: GGKRVEVAEK KGNTYSWDLL FGKKTKTN

Arabidopsis Description

At3g03330/T21P5_25 [Source:UniProtKB/TrEMBL;Acc:Q8L7U0]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.