Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43128 | Canola | extracellular, golgi, vacuole | 98.48 | 98.48 |
| Bra031995.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 98.17 | 98.17 |
| AT3G03330.1 | Thale cress | golgi | 90.24 | 90.24 |
| CDY50698 | Canola | vacuole | 80.18 | 83.76 |
| CDX75819 | Canola | cytosol, nucleus, plasma membrane | 15.85 | 78.79 |
| VIT_04s0023g00860.t01 | Wine grape | endoplasmic reticulum, vacuole | 68.6 | 70.75 |
| KRH00954 | Soybean | endoplasmic reticulum | 66.77 | 68.65 |
| CDY43129 | Canola | extracellular, golgi, vacuole | 84.45 | 67.89 |
| Solyc04g024590.2.1 | Tomato | endoplasmic reticulum | 64.33 | 66.35 |
| TraesCS4B01G084000.1 | Wheat | vacuole | 64.94 | 65.14 |
| TraesCS4D01G081900.1 | Wheat | vacuole | 64.63 | 64.83 |
| TraesCS4A01G232000.1 | Wheat | vacuole | 64.63 | 64.83 |
| Os11t0265400-01 | Rice | plasma membrane | 64.63 | 64.63 |
| KXG28278 | Sorghum | endoplasmic reticulum | 64.33 | 63.75 |
| PGSC0003DMT400066088 | Potato | endoplasmic reticulum, extracellular | 35.37 | 61.38 |
| KRH40271 | Soybean | vacuole | 57.01 | 59.55 |
| GSMUA_Achr6P21340_001 | Banana | endoplasmic reticulum, vacuole | 64.02 | 58.33 |
| Zm00001d004616_P008 | Maize | endoplasmic reticulum, golgi | 63.41 | 58.26 |
| HORVU4Hr1G014360.2 | Barley | mitochondrion | 56.4 | 47.56 |
| CDX90560 | Canola | endoplasmic reticulum | 25.91 | 27.51 |
| CDY09733 | Canola | endoplasmic reticulum, golgi | 25.91 | 27.51 |
| CDX83013 | Canola | endoplasmic reticulum | 10.98 | 27.48 |
| CDX71662 | Canola | plasma membrane, vacuole | 25.0 | 27.42 |
| CDY05818 | Canola | endoplasmic reticulum, extracellular | 12.8 | 26.92 |
| CDY21787 | Canola | endoplasmic reticulum, golgi | 24.39 | 25.81 |
| CDY16353 | Canola | cytosol | 25.3 | 23.78 |
| CDX91557 | Canola | plasma membrane | 20.73 | 23.78 |
| CDX94277 | Canola | mitochondrion | 6.71 | 23.66 |
| CDY16351 | Canola | plasma membrane | 22.26 | 23.47 |
| CDX83014 | Canola | mitochondrion | 14.33 | 23.27 |
| CDY68167 | Canola | cytosol | 24.7 | 23.21 |
| CDY34029 | Canola | cytosol | 24.09 | 23.17 |
| CDX83157 | Canola | cytosol | 18.29 | 19.29 |
| CDX90742 | Canola | cytosol | 21.65 | 15.74 |
| CDY05081 | Canola | cytosol | 21.65 | 15.57 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | GO:A0A078IMR6 | UniProt:A0A078IMR6 | EnsemblPlants:CDY50699 | ProteinID:CDY50699 |
| ProteinID:CDY50699.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00097277001 | InterPro:NAD(P)-bd_dom_sf |
| PFAM:PF00106 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR45274 | InterPro:SDR_fam | SMART:SM00822 |
| SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001AE6135 | SEG:seg |
Description
BnaC05g47840DBnaC05g47840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMR6]
Coordinates
chrLK032932:-:52637..55379
Molecular Weight (calculated)
35660.4 Da
IEP (calculated)
9.829
GRAVY (calculated)
0.002
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTLLFSSLG LLLLLGLLLK FAFADGDLTL ISKKHAKREA IEGKVVWITG SSRGIGEVLA KQFASLGAKL ILSARNEAEL VRVKSELKGK YAPEDVKVLP
101: LDLASGEEGL KGVVEQALSL FPGAGVDYLV HNAAYERPKS NAVDASEENL KTTFEVNVFG TISLTKLVTP HMLKQGGGHF VVISSAAGKV PSPGQAIYAA
201: SKHALQGYFH TLRSEFFQKG IKVTVVCPGP IETSNGTGTS TSEDKKSPEK RVSSERCAEL TIIAASHNLK EAWISYQPVL LVMYLVQYMP FLGFWLMDKV
301: GGKRVEVAEK KGNTYSWNLL FQKKTKTN
101: LDLASGEEGL KGVVEQALSL FPGAGVDYLV HNAAYERPKS NAVDASEENL KTTFEVNVFG TISLTKLVTP HMLKQGGGHF VVISSAAGKV PSPGQAIYAA
201: SKHALQGYFH TLRSEFFQKG IKVTVVCPGP IETSNGTGTS TSEDKKSPEK RVSSERCAEL TIIAASHNLK EAWISYQPVL LVMYLVQYMP FLGFWLMDKV
301: GGKRVEVAEK KGNTYSWNLL FQKKTKTN
001: MLTLLFFSLG ALLLIVLLFK FAFADGDFTL ISKKHVKREA IQGKVVWITG ASRGIGEILA KQFASLDAKL ILSARNKAEL DRVKSELKGK FAPEDVKVLP
101: LDLASGEESL KHVVEQAVSL FPGAGVDYLV HNAAFERPKS KASDASEETL KTTFDVNVFG TISLTKLVAP HMLKQGGGHF VVISSAAGKV PSPGQAIYSA
201: SKHALHGYFH SLRSEFCQKG IKVTVVCPGP IETWNGTGTS TSEDSKSPEK RVSSERCAEL TIIAASHNLK EAWISYQPVL LVMYLVQYMP SLGFWLMDKV
301: GGKRVEVAEK KGNTYSWDLL FGKKTKTN
101: LDLASGEESL KHVVEQAVSL FPGAGVDYLV HNAAFERPKS KASDASEETL KTTFDVNVFG TISLTKLVAP HMLKQGGGHF VVISSAAGKV PSPGQAIYSA
201: SKHALHGYFH SLRSEFCQKG IKVTVVCPGP IETWNGTGTS TSEDSKSPEK RVSSERCAEL TIIAASHNLK EAWISYQPVL LVMYLVQYMP SLGFWLMDKV
301: GGKRVEVAEK KGNTYSWDLL FGKKTKTN
Arabidopsis Description
At3g03330/T21P5_25 [Source:UniProtKB/TrEMBL;Acc:Q8L7U0]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.