Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g024590.2.1 | Tomato | endoplasmic reticulum | 95.24 | 56.6 |
| VIT_04s0023g00860.t01 | Wine grape | endoplasmic reticulum, vacuole | 72.49 | 43.08 |
| KRH00954 | Soybean | endoplasmic reticulum | 70.37 | 41.69 |
| KRH40271 | Soybean | vacuole | 68.78 | 41.4 |
| AT3G03330.1 | Thale cress | golgi | 62.96 | 36.28 |
| CDY43128 | Canola | extracellular, golgi, vacuole | 61.9 | 35.67 |
| Bra031995.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 61.38 | 35.37 |
| CDY50699 | Canola | extracellular, golgi, vacuole | 61.38 | 35.37 |
| CDY50698 | Canola | vacuole | 58.73 | 35.35 |
| KXG28278 | Sorghum | endoplasmic reticulum | 61.38 | 35.05 |
| Os11t0265400-01 | Rice | plasma membrane | 60.32 | 34.76 |
| TraesCS4D01G081900.1 | Wheat | vacuole | 59.79 | 34.56 |
| TraesCS4B01G084000.1 | Wheat | vacuole | 59.79 | 34.56 |
| TraesCS4A01G232000.1 | Wheat | vacuole | 59.26 | 34.25 |
| GSMUA_Achr6P21340_001 | Banana | endoplasmic reticulum, vacuole | 61.9 | 32.5 |
| Zm00001d004616_P008 | Maize | endoplasmic reticulum, golgi | 59.26 | 31.37 |
| HORVU4Hr1G014360.2 | Barley | mitochondrion | 60.32 | 29.31 |
| Bra031996.1-P | Field mustard | endoplasmic reticulum, vacuole | 53.44 | 28.21 |
| CDY43129 | Canola | extracellular, golgi, vacuole | 58.2 | 26.96 |
| PGSC0003DMT400028017 | Potato | cytosol | 10.05 | 22.35 |
| AT3G03350.2 | Thale cress | vacuole | 38.62 | 19.52 |
| PGSC0003DMT400068094 | Potato | extracellular, plasma membrane, vacuole | 27.51 | 15.38 |
| PGSC0003DMT400069254 | Potato | endoplasmic reticulum, extracellular, golgi | 27.51 | 14.9 |
| PGSC0003DMT400092688 | Potato | endoplasmic reticulum | 25.93 | 14.71 |
| PGSC0003DMT400074514 | Potato | endoplasmic reticulum, golgi | 24.87 | 13.31 |
| PGSC0003DMT400028018 | Potato | plastid | 10.05 | 10.92 |
| CDX75819 | Canola | cytosol, nucleus, plasma membrane | 1.06 | 3.03 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400066088 | EnsemblPlantsGene:PGSC0003DMG400025729 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | InterPro:Sc_DH/Rdtase_CS |
| PANTHER:PTHR45274 | PFAM:PF00106 | PGSC:PGSC0003DMG400025729 | PRINTS:PR00081 | ScanProsite:PS00061 | SEG:seg |
| SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI000295F519 | UniProt:M1CEZ7 | MapMan:35.2 | : |
Description
Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400025729]
Coordinates
chr4:-:29904049..29910305
Molecular Weight (calculated)
20905.8 Da
IEP (calculated)
8.909
GRAVY (calculated)
0.310
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MMILYLVFLV IFTFLFIKFL TADGEILAKQ LASLGAKLII SARNEAELQH VKQQLTGKYA PRDVMVLPLD LTSGEESLRL AVEKAESFFD AAGVDYMIHN
101: AAYERPKSTA LDVTEETLKA MLNVNVVGPI SMTRMLVPYM LKRGRGHLVV MSSAAGKTPA PGQAVYSASK FAVNGYFHSL RSEVCIYFF
101: AAYERPKSTA LDVTEETLKA MLNVNVVGPI SMTRMLVPYM LKRGRGHLVV MSSAAGKTPA PGQAVYSASK FAVNGYFHSL RSEVCIYFF
001: MLTLLFFSLG ALLLIVLLFK FAFADGDFTL ISKKHVKREA IQGKVVWITG ASRGIGEILA KQFASLDAKL ILSARNKAEL DRVKSELKGK FAPEDVKVLP
101: LDLASGEESL KHVVEQAVSL FPGAGVDYLV HNAAFERPKS KASDASEETL KTTFDVNVFG TISLTKLVAP HMLKQGGGHF VVISSAAGKV PSPGQAIYSA
201: SKHALHGYFH SLRSEFCQKG IKVTVVCPGP IETWNGTGTS TSEDSKSPEK RVSSERCAEL TIIAASHNLK EAWISYQPVL LVMYLVQYMP SLGFWLMDKV
301: GGKRVEVAEK KGNTYSWDLL FGKKTKTN
101: LDLASGEESL KHVVEQAVSL FPGAGVDYLV HNAAFERPKS KASDASEETL KTTFDVNVFG TISLTKLVAP HMLKQGGGHF VVISSAAGKV PSPGQAIYSA
201: SKHALHGYFH SLRSEFCQKG IKVTVVCPGP IETWNGTGTS TSEDSKSPEK RVSSERCAEL TIIAASHNLK EAWISYQPVL LVMYLVQYMP SLGFWLMDKV
301: GGKRVEVAEK KGNTYSWDLL FGKKTKTN
Arabidopsis Description
At3g03330/T21P5_25 [Source:UniProtKB/TrEMBL;Acc:Q8L7U0]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.