CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40271	Soybean	vacuole	85.27	86.62
VIT_04s0023g00860.t01	Wine grape	endoplasmic reticulum, vacuole	78.06	78.3
Solyc04g024590.2.1	Tomato	endoplasmic reticulum	71.79	72.01
PGSC0003DMT400066088	Potato	endoplasmic reticulum, extracellular	41.69	70.37
AT3G03330.1	Thale cress	golgi	70.22	68.29
Bra031995.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	68.97	67.07
CDY43128	Canola	extracellular, golgi, vacuole	68.65	66.77
CDY50699	Canola	extracellular, golgi, vacuole	68.65	66.77
CDX75819	Canola	cytosol, nucleus, plasma membrane	13.79	66.67
TraesCS4D01G081900.1	Wheat	vacuole	67.4	65.75
TraesCS4B01G084000.1	Wheat	vacuole	66.77	65.14
TraesCS4A01G232000.1	Wheat	vacuole	66.77	65.14
Os11t0265400-01	Rice	plasma membrane	65.83	64.02
KXG28278	Sorghum	endoplasmic reticulum	65.2	62.84
CDY50698	Canola	vacuole	59.87	60.83
GSMUA_Achr6P21340_001	Banana	endoplasmic reticulum, vacuole	67.4	59.72
Zm00001d004616_P008	Maize	endoplasmic reticulum, golgi	64.58	57.7
CDY43129	Canola	extracellular, golgi, vacuole	64.26	50.25
HORVU4Hr1G014360.2	Barley	mitochondrion	60.5	49.61
Bra031996.1-P	Field mustard	endoplasmic reticulum, vacuole	52.66	46.93
AT3G03350.2	Thale cress	vacuole	30.72	26.2
KRH59797	Soybean	endoplasmic reticulum, extracellular, plasma membrane	15.05	23.53
KRH59794	Soybean	extracellular, plasma membrane	8.15	23.21
KRH59795	Soybean	extracellular	22.26	21.98
KRH41112	Soybean	endoplasmic reticulum, golgi	24.14	20.42
KRH77685	Soybean	endoplasmic reticulum	22.26	20.0
KRH27806	Soybean	nucleus	21.94	19.02

Protein Annotations

EntrezGene:100795991	Gene3D:3.40.50.720	MapMan:35.1	UniProt:A0A0R4J5Y0	EMBL:ACUP02011484	EnsemblPlantsGene:GLYMA_18G244400
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	EnsemblPlants:KRH00954	ProteinID:KRH00954	ProteinID:KRH00954.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR45274	InterPro:SDR_fam
SMART:SM00822	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI0001AE6184	SEG:seg

Description

hypothetical protein

Coordinates

chr18:+:53211659..53216296

Molecular Weight (calculated)

35188.0 Da

IEP (calculated)

9.621

GRAVY (calculated)

0.044

Length

319 amino acids

Sequence
(BLAST)

001: MLIVFICIFL FFIFLYKFLI AYGDFTLMSK KQPKRQEIED KVVWITGASR GIGEILAKQF ASLGAKLIIS ARNEAELNRV RTQLKGKHAP DDVKILPLDL
101: SSGEDSLRIA VEKAESFFPD SGVDYMVHNA AFERPKTSIL DVTEEGLKAT FDVNVLGTIT LTKLLAPFML KRGHGHFVVM SSAAGKTPAP GQAVYSASKY
201: ALNGYFHTLR SELCQKGIQV TVVCPGPIET SNNAGSRVPS EKRVPSERCA ELTIIAATHG LKEAWISYQP VLAVMYLVQY MPTIGYWVMD KIGKSRVEAA
301: EQKGNTYSLS LLLGKKKAT

Best Arabidopsis Sequence Match ( AT3G03330.1 )
(BLAST)

001: MLTLLFFSLG ALLLIVLLFK FAFADGDFTL ISKKHVKREA IQGKVVWITG ASRGIGEILA KQFASLDAKL ILSARNKAEL DRVKSELKGK FAPEDVKVLP
101: LDLASGEESL KHVVEQAVSL FPGAGVDYLV HNAAFERPKS KASDASEETL KTTFDVNVFG TISLTKLVAP HMLKQGGGHF VVISSAAGKV PSPGQAIYSA
201: SKHALHGYFH SLRSEFCQKG IKVTVVCPGP IETWNGTGTS TSEDSKSPEK RVSSERCAEL TIIAASHNLK EAWISYQPVL LVMYLVQYMP SLGFWLMDKV
301: GGKRVEVAEK KGNTYSWDLL FGKKTKTN

Arabidopsis Description

At3g03330/T21P5_25 [Source:UniProtKB/TrEMBL;Acc:Q8L7U0]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.