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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 7
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
 endoplasmic reticulum: 27224218
nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH27806 Soybean nucleus 85.63 82.61
Solyc06g064650.2.1 Tomato endoplasmic reticulum 65.92 72.67
VIT_18s0001g06750.t01 Wine grape endoplasmic reticulum 71.27 71.47
GSMUA_Achr7P02980_001 Banana endoplasmic reticulum, golgi 61.97 63.58
GSMUA_AchrUn_... Banana extracellular, golgi 63.66 63.13
AT4G10020.1 Thale cress endoplasmic reticulum 66.48 60.67
Os03t0842900-01 Rice plastid 58.87 58.87
KXG37163 Sorghum endoplasmic reticulum 59.44 55.38
Bra000697.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 66.48 52.8
CDX90742 Canola cytosol 66.2 52.11
CDY05081 Canola cytosol 66.48 51.75
HORVU5Hr1G120110.2 Barley endoplasmic reticulum, vacuole 54.93 51.72
TraesCS5D01G529200.1 Wheat endoplasmic reticulum, vacuole 56.06 51.42
TraesCS4A01G343700.1 Wheat endoplasmic reticulum, vacuole 56.34 51.41
Zm00001d034801_P001 Maize peroxisome 37.46 51.35
TraesCS5B01G530500.1 Wheat endoplasmic reticulum 54.93 50.39
KRH59795 Soybean extracellular 38.03 41.8
KRH59794 Soybean extracellular, plasma membrane 12.68 40.18
KRH41112 Soybean endoplasmic reticulum, golgi 39.44 37.14
KRH59797 Soybean endoplasmic reticulum, extracellular, plasma membrane 20.28 35.29
KRH00954 Soybean endoplasmic reticulum 20.0 22.26
KRH40271 Soybean vacuole 16.34 18.47
Protein Annotations
EntrezGene:100780731Gene3D:3.40.50.720MapMan:5.9.4EMBL:ACUP02000681EMBL:BT093665UniProt:C6T871
EnsemblPlantsGene:GLYMA_01G227900GO:GO:0003674GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0016491
GO:GO:0055114EnsemblPlants:KRH77685ProteinID:KRH77685ProteinID:KRH77685.1InterPro:NAD(P)-bd_dom_sfPFAM:PF00106
PRINTS:PR00080PRINTS:PR00081ScanProsite:PS00061PANTHER:PTHR43391PANTHER:PTHR43391:SF14InterPro:SDR_fam
SUPFAM:SSF51735InterPro:Sc_DH/Rdtase_CSUniParc:UPI0001B15F02:::
Description
hypothetical protein
Coordinates
chr1:+:55609637..55612383
Molecular Weight (calculated)
40159.7 Da
IEP (calculated)
6.676
GRAVY (calculated)
0.080
Length
355 amino acids
Sequence
(BLAST)
001: MDFLNFMLNL LVPPGSMLTL AFSWPALCFL NVCEWLYNSI YGEDIDNKVV IITGASSGIG EQIAYEYALR RANLTLVARR EHRLRGIAEN AKRLGARHVM
101: IMAADVVKEE DCRRFVNETI NVFGRVDHLV NTVSLGHTFC FEEVTDTSVF PVLLDINFWG NVYPTFVALP YLHQSNGRII INASVESWLP MPRMSLYAAA
201: KAALVNFYET LRFELKDEVG ITIATHGWIG SEMTRGKFML EEGAEMQWKE EREVHVMGGP VEEFARLIVS GACRGDAYVK FPSWYDVFLL YRVFAPRVLN
301: WAFRFLISPQ GTRRASSYVG TGKHIEAVGM VRPMAMLEGT SPTHTGQLIS QHKLD
Best Arabidopsis Sequence Match ( AT4G10020.1 )
(BLAST)
001: MVDLLNSVMN LVAPPATMVV MAFAWPLLSF ISFSERAYNS YFATENMEDK VVVITGASSA IGEQIAYEYA KRGANLVLVA RREQRLRVVS NKAKQIGANH
101: VIIIAADVIK EDDCRRFITQ AVNYYGRVDH LVNTASLGHT FYFEEVSDTT VFPHLLDINF WGNVYPTYVA LPYLHQTNGR IVVNASVENW LPLPRMSLYS
201: AAKAALVNFY ETLRFELNGD VGITIATHGW IGSEMSGGKF MLEEGAEMQW KEEREVPANG GPLEEFAKMI VAGACRGDAY VKFPNWYDVF LLYRVFTPNV
301: LRWTFKLLLS TEGTRRSSLV GVGSGMPVDE SSSQMKLMLE GGPPRVPASP PRYTASPPHY TASPPRYPAS PPRYPASPPR FSQFNIQEL
Arabidopsis Description
HSD511-beta-hydroxysteroid dehydrogenase-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0G0]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.