CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

nucleus: 27291164
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77685	Soybean	endoplasmic reticulum	82.61	85.63
Solyc06g064650.2.1	Tomato	endoplasmic reticulum	64.13	73.29
VIT_18s0001g06750.t01	Wine grape	endoplasmic reticulum	67.93	70.62
GSMUA_Achr7P02980_001	Banana	endoplasmic reticulum, golgi	59.51	63.29
GSMUA_AchrUn_...	Banana	extracellular, golgi	60.6	62.29
AT4G10020.1	Thale cress	endoplasmic reticulum	62.5	59.13
Os03t0842900-01	Rice	plastid	55.98	58.03
KXG37163	Sorghum	endoplasmic reticulum	56.25	54.33
Bra000697.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	62.5	51.45
HORVU5Hr1G120110.2	Barley	endoplasmic reticulum, vacuole	52.45	51.19
CDX90742	Canola	cytosol	62.23	50.78
TraesCS5D01G529200.1	Wheat	endoplasmic reticulum, vacuole	53.26	50.65
TraesCS4A01G343700.1	Wheat	endoplasmic reticulum, vacuole	53.53	50.64
CDY05081	Canola	cytosol	62.5	50.44
Zm00001d034801_P001	Maize	peroxisome	35.33	50.19
TraesCS5B01G530500.1	Wheat	endoplasmic reticulum	52.45	49.87
KRH59795	Soybean	extracellular	36.96	42.11
KRH59794	Soybean	extracellular, plasma membrane	11.96	39.29
KRH41112	Soybean	endoplasmic reticulum, golgi	37.5	36.6
KRH59797	Soybean	endoplasmic reticulum, extracellular, plasma membrane	18.48	33.33
KRH00954	Soybean	endoplasmic reticulum	19.02	21.94
KRH40271	Soybean	vacuole	15.76	18.47

Protein Annotations

Gene3D:3.40.50.720	MapMan:5.9.4	UniProt:A0A0R0HAM0	EMBL:ACUP02006733	EnsemblPlantsGene:GLYMA_11G015100	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EnsemblPlants:KRH27806
ProteinID:KRH27806	ProteinID:KRH27806.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081
ScanProsite:PS00061	PANTHER:PTHR43391	PANTHER:PTHR43391:SF14	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS
UniParc:UPI0006EDD354	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:1036431..1039028

Molecular Weight (calculated)

41870.1 Da

IEP (calculated)

6.507

GRAVY (calculated)

0.240

Length

368 amino acids

Sequence
(BLAST)

001: MMSLHIHVCS QLFFYLHVII TLFKPLHLHV QLTHPLFSLS IPSQLFIEEA MDFLNFLLNL LVPPGSMITL AFSWPALCFL NFCEWLCNSI YGEDMDNKVV
101: IITGASSGIG EQIAYEYALR RANLTLVARR EHRLRGIAEN AKRLGARHVM IMAADVVKED DCRRFVNETI NVFGRVDHLV NTVSLGHTFC FEEATDTSVF
201: PVLLDINFWG NVYPTFVALP YLHQSNGRII INASVESWLP MPRMSLYAAA KAALVNFYET LRFELKDEVG ITIATHGWIG SEMTRGKFML EEGAEMQWKE
301: EREVQVTGGP VEEFARLIVS GACRGDAYVK FPSWYDVFLL YRVFAPRVLN WAFRLLISPQ GTRGASLM

Best Arabidopsis Sequence Match ( AT4G10020.1 )
(BLAST)

001: MVDLLNSVMN LVAPPATMVV MAFAWPLLSF ISFSERAYNS YFATENMEDK VVVITGASSA IGEQIAYEYA KRGANLVLVA RREQRLRVVS NKAKQIGANH
101: VIIIAADVIK EDDCRRFITQ AVNYYGRVDH LVNTASLGHT FYFEEVSDTT VFPHLLDINF WGNVYPTYVA LPYLHQTNGR IVVNASVENW LPLPRMSLYS
201: AAKAALVNFY ETLRFELNGD VGITIATHGW IGSEMSGGKF MLEEGAEMQW KEEREVPANG GPLEEFAKMI VAGACRGDAY VKFPNWYDVF LLYRVFTPNV
301: LRWTFKLLLS TEGTRRSSLV GVGSGMPVDE SSSQMKLMLE GGPPRVPASP PRYTASPPHY TASPPRYPAS PPRYPASPPR FSQFNIQEL

Arabidopsis Description

HSD511-beta-hydroxysteroid dehydrogenase-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0G0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.